Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D17
         (513 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC106004-1|AAI06005.1|  514|Homo sapiens pleiotropic regulator 1...    67   3e-11
BC020786-1|AAH20786.1|  505|Homo sapiens PLRG1 protein protein.        67   3e-11
AF044333-1|AAD09407.1|  514|Homo sapiens pleiotropic regulator 1...    67   3e-11

>BC106004-1|AAI06005.1|  514|Homo sapiens pleiotropic regulator 1
           (PRL1 homolog, Arabidopsis) protein.
          Length = 514

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)
 Frame = +3

Query: 198 MSDDVIKHSVHTLVFRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQ 377
           M ++V KHSVHTLVFRSLKR+HDMF+++ G   P+DE++ K    +K ++ YG V+    
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPT 60

Query: 378 NAQAVKNQETINRPET 425
           + + +K +   N  ++
Sbjct: 61  SKENLKEKGPQNATDS 76


>BC020786-1|AAH20786.1|  505|Homo sapiens PLRG1 protein protein.
          Length = 505

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)
 Frame = +3

Query: 198 MSDDVIKHSVHTLVFRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQ 377
           M ++V KHSVHTLVFRSLKR+HDMF+++ G   P+DE++ K    +K ++ YG V+    
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPT 60

Query: 378 NAQAVKNQETINRPET 425
           + + +K +   N  ++
Sbjct: 61  SKENLKEKGPQNATDS 76


>AF044333-1|AAD09407.1|  514|Homo sapiens pleiotropic regulator 1
           protein.
          Length = 514

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)
 Frame = +3

Query: 198 MSDDVIKHSVHTLVFRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQ 377
           M ++V KHSVHTLVFRSLKR+HDMF+++ G   P+DE++ K    +K ++ YG V+    
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPT 60

Query: 378 NAQAVKNQETINRPET 425
           + + +K +   N  ++
Sbjct: 61  SKENLKEKGPQNATDS 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,190,128
Number of Sequences: 237096
Number of extensions: 1498590
Number of successful extensions: 2367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)