Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D17
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    45   3e-05
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    45   3e-05
M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein ( C.ele...    32   0.28 
M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein ( C.ele...    32   0.28 
L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated p...    32   0.28 
L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated p...    32   0.28 
U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin fam...    28   3.4  
U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin fam...    28   3.4  
U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin iso...    28   3.4  
AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical ...    28   4.5  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    27   6.0  
AL023828-29|CAA19454.2|  483|Caenorhabditis elegans Hypothetical...    27   6.0  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/68 (29%), Positives = 38/68 (55%)
 Frame = +3

Query: 216 KHSVHTLVFRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVK 395
           K ++   VF+SLKR+ D+F  +    PP+ E+ + +++ +K K  YG V+  V+  +  +
Sbjct: 29  KKALLNQVFKSLKRAQDLFYHDYAQPPPMPEENDSLIRSMKRKHEYGNVIKKVEEMKVRR 88

Query: 396 NQETINRP 419
             E +  P
Sbjct: 89  ENEMLALP 96


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/68 (29%), Positives = 38/68 (55%)
 Frame = +3

Query: 216 KHSVHTLVFRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVK 395
           K ++   VF+SLKR+ D+F  +    PP+ E+ + +++ +K K  YG V+  V+  +  +
Sbjct: 29  KKALLNQVFKSLKRAQDLFYHDYAQPPPMPEENDSLIRSMKRKHEYGNVIKKVEEMKVRR 88

Query: 396 NQETINRP 419
             E +  P
Sbjct: 89  ENEMLALP 96


>M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 429

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 240 FRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRP 419
           F SL  SH+  ++ + +L    EKAE+ +K    KD+ G + G + N    + + +I  P
Sbjct: 279 FESLTLSHNNMVALKPILHSWLEKAEEAMKQ---KDTIGDINGILPNTDKKRKRTSIAAP 335

Query: 420 E 422
           E
Sbjct: 336 E 336


>M22363-1|AAA28158.1|  467|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 467

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 240 FRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRP 419
           F SL  SH+  ++ + +L    EKAE+ +K    KD+ G + G + N    + + +I  P
Sbjct: 317 FESLTLSHNNMVALKPILHSWLEKAEEAMKQ---KDTIGDINGILPNTDKKRKRTSIAAP 373

Query: 420 E 422
           E
Sbjct: 374 E 374


>L10990-6|AAB59176.1|  467|Caenorhabditis elegans Uncoordinated
           protein 86, isoform b protein.
          Length = 467

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 240 FRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRP 419
           F SL  SH+  ++ + +L    EKAE+ +K    KD+ G + G + N    + + +I  P
Sbjct: 317 FESLTLSHNNMVALKPILHSWLEKAEEAMKQ---KDTIGDINGILPNTDKKRKRTSIAAP 373

Query: 420 E 422
           E
Sbjct: 374 E 374


>L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated
           protein 86, isoform a protein.
          Length = 429

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 240 FRSLKRSHDMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRP 419
           F SL  SH+  ++ + +L    EKAE+ +K    KD+ G + G + N    + + +I  P
Sbjct: 279 FESLTLSHNNMVALKPILHSWLEKAEEAMKQ---KDTIGDINGILPNTDKKRKRTSIAAP 335

Query: 420 E 422
           E
Sbjct: 336 E 336


>U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin family
           protein 8, isoformb protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 351 YGQVMGAVQNAQAVKNQETINRPETPHDIEIAESAALGSEGLVVPYSGPA 500
           +G+V+  V+  +A++N ET N  +    +EI     +  +G VV  +G A
Sbjct: 140 FGEVIKGVEVVKAIENLETGNEDKPVCKVEITHCGEMVRKGDVVGNAGAA 189


>U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin family
           protein 8, isoforma protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 351 YGQVMGAVQNAQAVKNQETINRPETPHDIEIAESAALGSEGLVVPYSGPA 500
           +G+V+  V+  +A++N ET N  +    +EI     +  +G VV  +G A
Sbjct: 140 FGEVIKGVEVVKAIENLETGNEDKPVCKVEITHCGEMVRKGDVVGNAGAA 189


>U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin
           isoform 8 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 351 YGQVMGAVQNAQAVKNQETINRPETPHDIEIAESAALGSEGLVVPYSGPA 500
           +G+V+  V+  +A++N ET N  +    +EI     +  +G VV  +G A
Sbjct: 140 FGEVIKGVEVVKAIENLETGNEDKPVCKVEITHCGEMVRKGDVVGNAGAA 189


>AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical
           protein C09E8.3 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
 Frame = +3

Query: 300 IDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRPETP-----HDIEIAESA 455
           + E A+ ++K++ A+ S G+ +G  Q  + VK+ ETI  PE P      D+E AE+A
Sbjct: 91  VREHAKCLVKLLDAEKS-GK-LGRKQYQKVVKSPETIVLPENPKMLTKKDLEKAENA 145


>AC024138-1|AAU05565.1|  319|Caenorhabditis elegans Hypothetical
           protein H08J11.2 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 264 DMFLSNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRPETPHDIEI 443
           D  LSN  LL P  ++   + +  +  ++  +V G        + +  +  P T   IEI
Sbjct: 72  DRRLSNISLLSPTPDEDFGLEQQEQQPENSEEVRGRESRTSLEEERIVVGEPRTTRQIEI 131

Query: 444 AESAA 458
            +SA+
Sbjct: 132 TQSAS 136


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +3

Query: 249 LKRSHDMFLSNQGLLPPIDEKAEK--ILKMVKAKDSYGQVMGAVQNAQAVKNQETINRPE 422
           LK++++  +  +   P  + K  K  I   +K +  +         A++V+N  T+N P+
Sbjct: 49  LKQNYEKLVEEEQFDPRAELKKSKHRIEDYLKVRSQFAYKAKISLEARSVRNDSTVNDPQ 108

Query: 423 TPHDIEIAESAALGSEGLVV 482
           +   I    SA  G++G  +
Sbjct: 109 SKSFIRFM-SAKQGNDGTTI 127


>AL023828-29|CAA19454.2|  483|Caenorhabditis elegans Hypothetical
           protein Y17G7B.9 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 348 SYGQVMGAVQNAQAVKNQETINRPETPHDIEIAESAALGSEGLV 479
           S+G  +   +   AV N++T N+P++ HD    ++  L  +  V
Sbjct: 204 SFGDEVEEDEQELAVFNKKTANKPKSAHDAHDNDTVGLSKQAAV 247


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 267 MFLSNQGLLPPIDEKAEKILKMVKA 341
           MFL   G++  ++EKA KI +M KA
Sbjct: 546 MFLERLGMIQDLNEKATKIQRMWKA 570


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 413 VNGFLIFYCLSILYGTHNLTIAIFRLYHFKYFFSF 309
           +NG +++    ++Y     T+AI  L+H+  F +F
Sbjct: 294 LNGTILYVGADLIYNKTMNTVAIVTLFHYMLFSAF 328


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 413 VNGFLIFYCLSILYGTHNLTIAIFRLYHFKYFFSF 309
           +NG +++    ++Y     T+AI  L+H+  F +F
Sbjct: 294 LNGTILYVGADLIYNKTMNTVAIVTLFHYMLFSAF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,629
Number of Sequences: 27780
Number of extensions: 238464
Number of successful extensions: 565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)