Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    33   0.034
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.32 
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.0  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   5.2  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   5.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.1  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    25   9.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.1  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 28/89 (31%), Positives = 37/89 (41%)
 Frame = +1

Query: 259  SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPI 438
            S S+P  S      P SP+ SPT      YSP  +  +Y   +P YS P  P +   A  
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYS--ATS 1610

Query: 439  PISIPAGASLTPVSLQHVQLVPCMCPVAP 525
            P   P   S +P S  +    P   P +P
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
 Frame = +1

Query: 223 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQ---- 384
           V+SS +    W   + SA PS+   W QP +P  +P +       P     T Q      
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS 475

Query: 385 --APQYSQPEVPIHQNMAPIPISIPAGASLTPV 477
              P  + P +P      P     P G  L P+
Sbjct: 476 NLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPI 508


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 299 NHYLLTSPRQSVINICIRHMNRTK 370
           NHY +     S++N C+R++  +K
Sbjct: 22  NHYDMQREESSIVNACLRYLGYSK 45


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 301 PLSPNVSPTIRYQYMYSPYESH-KTYQLQAPQYSQPEVPIHQNMAPIPISIPAGAS 465
           P+ PNV   +     YS   S+ +TYQ  A   +   +P     AP+P+  P   S
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVS 197


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 417  PPKYGSYTYQYSCRSEPYPGI 479
            PP  G+  Y+ SC S+ Y G+
Sbjct: 2134 PPAMGTLKYKLSCFSDSYMGV 2154


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 361 SHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTP 474
           SH  ++ + P   QP   +H++ + + I  PAG  + P
Sbjct: 90  SHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAGVPVHP 127


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +1

Query: 295 VQPLSPNVSPTIR-----YQYMYSPYESHKT-YQLQAPQYS-QPEVPIHQNMAPIPIS 447
           V P +PN    ++      ++  SP ES  + + LQ   +S +PE PI Q    IP+S
Sbjct: 190 VSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLS 247


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 319 SPTIRYQYMYSPYESHKTYQLQAPQYSQ 402
           SP+ R+   YSP     TYQ +   YSQ
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQ 348


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 277 SSQKTWVQPLSP--NVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPI 417
           SS K    P +P  ++SP +     YSP E+   Y  ++P+ S   VP+
Sbjct: 653 SSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPK-SSTMVPL 700


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 409 VPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCM 510
           +P+ QN   +PI+I   A+ + V +Q      CM
Sbjct: 495 LPVFQNQFALPINIGGYANASNVQVQTAYKCACM 528


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 272 GAESDPHFKKKASDDATIAKITRKLIIRLVCM 177
           G ++ P F KKA       K+T+K+++RL C+
Sbjct: 51  GGQTKPVFHKKA-------KVTKKVVLRLECV 75


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +1

Query: 271  PPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISI 450
            PP+        LSP+V+P +       P  S    Q+  P      +P    ++  PI+ 
Sbjct: 1035 PPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIAT 1094

Query: 451  PAGASLTPVS 480
             AG S T  S
Sbjct: 1095 SAGRSSTAAS 1104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,572
Number of Sequences: 5004
Number of extensions: 49966
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)