Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D14
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 1.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 4.3
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.3
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 4.3
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 5.7
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 5.7
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 5.7
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 25 7.5
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 10.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 10.0
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 25 10.0
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 10.0
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 25 10.0
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 82 NKHNDTPDEIKPVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDEDLEVKDKGPLRLE 255
+K N++ +P K D K K+GV + + +T ED+E ++ P L+
Sbjct: 26 SKRNNSQSSTEPRKNATS---LDSKKTTKKGVALPEIAERELTQEDIEFFNENPSSLK 80
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 154 FRLFSHLQLGFLPVLSRLVCHCVC 83
F L L FLP LS V CVC
Sbjct: 1631 FNELGPLTLSFLPTLSDTVLKCVC 1654
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 88 HNDTPDEIKPVKTPAE 135
HND P + KP+ P+E
Sbjct: 758 HNDAPPKAKPISAPSE 773
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 103 DEIKPVKTPAEDVKK-DEKPLPKRGVLVKRRTPKS 204
D K + TP + K +EKP+P G K P S
Sbjct: 141 DAAKDLSTPQDSSKPIEEKPMPDLGAEQKESAPSS 175
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 250 LEAKILNYQSPSL--IYMSLVHQQK-TFNELFENIQRHYAKAKNEIVRKWELN 399
L ++ SP+L + +S++ +K FN L H++ ++EI + +LN
Sbjct: 495 LAGNVVGLLSPALYILILSIIFPEKYDFNRLLATFAMHFSSEEDEIQQTKKLN 547
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 228 EGQGTSTLGSENTQLPIAVSNIHVAGPSAE 317
+G+G ST+ +++ P ++ H +GP A+
Sbjct: 411 DGEGISTMANKSNDQPTRRASTHNSGPPAK 440
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 46 HKFAVTFGIFNFNKHNDT-PDEIKPVKT 126
H+F +G+ N+N + DT P +I P T
Sbjct: 129 HRFLEQWGLINYNVNPDTRPSKIGPPST 156
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 115 PVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDEDLEVKDKGPLRLEAKILNYQSP 282
PV +PAE + + P+ ++TP+ L + L+ +AK N QSP
Sbjct: 86 PVPSPAESESSERRHTPQTNSQKSQKTPR------LSSNKRRTLKNDAKQRNSQSP 135
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 330 VIREHTEALRESEERNRKEMGAER*VLHFVRPVSDMAS 443
++RE+TE L EER + +R V +R +S+ AS
Sbjct: 124 IVRENTECLYVKEERMVQNTPGKR-VAEAIRRISEEAS 160
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 322 FNELFENIQRHYAKAKNEIVRKWELND 402
+NE+F I Y N+ RKW D
Sbjct: 47 YNEIFSQINAAYNILSNDDKRKWHEKD 73
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 135 RCEKRRKTVTEKGCFSKKAN----T*KCNR*RSGGEGQGTSTLGSENTQ 269
RC + E+ CF+ K N + +C + S G T LG+ +T+
Sbjct: 371 RCANHPPSFDERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLGNLHTK 419
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 10.0
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 103 DEIKPVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDEDLEVKDKGPLRLEA--KILNYQ 276
D++KP++ P+E V+ L L+ + T K L V K P+ +A K N
Sbjct: 34 DDMKPIELPSELVESPLSMLKDVATLIHQYTTK------LSVAAKPPITRDALEKYANDM 87
Query: 277 SPS---LIYMSLVHQQKTFNELFENIQRHYAK 363
+ + LI V + + E+ +N + YA+
Sbjct: 88 ATTITPLIAAVQVFNAEKYGEIIQNRLKMYAE 119
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 274 QSPSLIYMSLVHQQKTFNELFENIQRHYAKAKNE 375
++PS SL + N+LF++ RH A +KN+
Sbjct: 99 KTPSSDSPSLENSLSNLNDLFKSRGRHMAFSKND 132
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 4 RGEDVVCI--NYEMIKHKFAVTFGIFNFNKHNDTPDEIK 114
R E+VV + ++ I H TF K NDT D IK
Sbjct: 390 RPEEVVALVNTFDRISHSVEATFWFSLKAKTNDTLDAIK 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,748
Number of Sequences: 5004
Number of extensions: 50490
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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