Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D14
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 30 1.1
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 29 1.9
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 29 1.9
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 29 3.3
05_05_0234 + 23499406-23499418,23499945-23500008,23500641-235008... 28 5.8
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 7.7
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 7.7
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805 27 7.7
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788... 27 7.7
02_04_0044 - 19198001-19199236 27 7.7
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 373 RSSLSRNASVCSRITR*TFSADGPATCILE---TAIGS*VFSLPSVEVPCPSP 224
R +R A+ C R +R ++ GP++ I E A G V L S P PSP
Sbjct: 61 RPRCTRTAATCPRRSRLATASPGPSSVIAELHWAADGVSVLDLTSAVTPSPSP 113
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -2
Query: 538 APSAETGERFRWMQNPSRKLWPVYLVSLI*QRDAMSETGRTKCNTYRSAPISLRFRSSLS 359
AP ++ + + +PS K+W V +LI R+ RT +T + P S S S
Sbjct: 215 APRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTTPRSSTSDYSRS 274
Query: 358 RNASVCSRITR*TFSADGPA 299
R++ ++ F PA
Sbjct: 275 RSSPRVHSLSSEQFGMQDPA 294
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 115 PVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDEDLEVKDKGPLR 249
P P +K P P + +RRT K+ + D E +++ P R
Sbjct: 335 PEPAPRRGRRKSPSPSPPKAKTTRRRTKKNTQESDSEGEEEPPKR 379
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 103 DEIKPVKTPAEDVKKDEKPLPKRGVLVKRRTPKS--VTDEDLEVKDKGPLRLEAK 261
+ +KPV+ P VK D + +RR PK+ + DED V+ KG +AK
Sbjct: 266 EPVKPVRGPPAKVKDDRRKKTSTPAGPRRRMPKNDGLVDEDTAVR-KGRRWSKAK 319
>05_05_0234 +
23499406-23499418,23499945-23500008,23500641-23500827,
23501166-23501248,23501382-23501496,23501576-23501669,
23502547-23502626
Length = 211
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 79 FNKHNDTPDEIKPVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDE 216
F K N++ + ++P P E+ E+PLP+ VL++R T++
Sbjct: 27 FLKSNNSTETVEPPSAPIEE----EEPLPEELVLLERTLADGSTEQ 68
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 285 SNIHVAGP---SAENV*RVIREHTEALRESEERNRKEMG 392
S IH +GP N+ ++REH ++++ R R +MG
Sbjct: 687 SRIHYSGPLMPPGVNMEEILREHERQIQQAVRRARLDMG 725
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 145 KDEKPLPKRGVLVKRRTPKSVTD 213
K+++ +P+RG KRRTP +T+
Sbjct: 1674 KNDRRVPERGRAAKRRTPADMTE 1696
>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
Length = 517
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 436 WRRAVILEIQDKLAKVFYSDFASIETVPLSL--LRELT 543
W RA++LE++ +VF++ ASI + +S L ELT
Sbjct: 233 WSRALVLELRTPRLRVFHTRNASIGRLVISAPRLEELT 270
>03_02_0375 +
7880543-7880872,7881291-7881365,7881445-7881531,
7881619-7881723,7881806-7881876,7882552-7882840
Length = 318
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 106 EIKPVKTPAEDVKKDEKPLPKRGVLVKRRTPKSVTDEDLEVKDK 237
++K +T ++D +K K K + K K + DEDLE+ K
Sbjct: 122 KVKKEETDSDDERKP-KAQKKSSAVTKTSKVKKIKDEDLEIDTK 164
>02_04_0044 - 19198001-19199236
Length = 411
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 439 AMSETGRTKCNTYRSAPISLRFRSSLSRNASVCSRIT 329
A S +G +CN S + LR + +RN+ C +T
Sbjct: 138 ASSNSGSVRCNGTASPDVELRCELNGNRNSDYCGPLT 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,197
Number of Sequences: 37544
Number of extensions: 318823
Number of successful extensions: 874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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