Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D13
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   1.4  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   1.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   5.8  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     24   7.7  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    24   7.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.7  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 292 MMNSTAYDLCSNCLFSSTWMTSQALS*PTI 381
           +++STAY L    ++ S+W+TS A S PT+
Sbjct: 485 VISSTAYFLIM-FVYHSSWVTSNAYSSPTV 513


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 3   TRAYGNDGLIADEPLPICNAHALHGVPPPAPDI 101
           TR+Y ND ++ DE     N + L+ V  PAP++
Sbjct: 145 TRSYSNDDILTDE--GALNENYLNTVDLPAPEL 175


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 109 TSIISGAGGGTPCKACALHIGNGSS 35
           + ++S A    P K+   HI NG S
Sbjct: 236 SKVMSSASANKPSKSSGFHINNGKS 260


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 12  YGNDGLIADEPLPICNAHALHGVPPPAPDII 104
           YG + L  D  LP  + H     P P  D+I
Sbjct: 371 YGLEYLFKDRSLPKVHVHCFCRFPDPEEDLI 401


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 310 YDLCSNCLFSSTWMTSQ-ALS*PTIKKV 390
           YD  S  L+S  W+T   ++S PT  KV
Sbjct: 131 YDFSSGRLYSGNWLTGTISVSDPTTGKV 158


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 18  NDGLIADEPLPICNAHALHGVPPP 89
           N    A  PLP  +A+A   VPPP
Sbjct: 170 NANYTASSPLPTASANAPLPVPPP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,716
Number of Sequences: 5004
Number of extensions: 22377
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)