Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D13
         (403 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75342-1|CAA53091.1|  596|Homo sapiens Shb protein.                    30   2.5  
BC094765-1|AAH94765.1|  414|Homo sapiens SHB protein protein.          30   2.5  
AL583849-1|CAH73120.1|  509|Homo sapiens Src homology 2 domain c...    30   2.5  
AL161448-1|CAH73192.1|  509|Homo sapiens Src homology 2 domain c...    30   2.5  
AL138752-4|CAI13876.1|  509|Homo sapiens Src homology 2 domain c...    30   2.5  

>X75342-1|CAA53091.1|  596|Homo sapiens Shb protein.
          Length = 596

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 145 AGDGDGWLGCACTSIISGAGGGTPCKACALHIGNGSSAMRPSFP 14
           A    G  GC C S  +GA   +   + + H+   SS  RP+ P
Sbjct: 217 ASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATP 260


>BC094765-1|AAH94765.1|  414|Homo sapiens SHB protein protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 145 AGDGDGWLGCACTSIISGAGGGTPCKACALHIGNGSSAMRPSFP 14
           A    G  GC C S  +GA   +   + + H+   SS  RP+ P
Sbjct: 247 ASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATP 290


>AL583849-1|CAH73120.1|  509|Homo sapiens Src homology 2 domain
           containing adaptor protein B protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 145 AGDGDGWLGCACTSIISGAGGGTPCKACALHIGNGSSAMRPSFP 14
           A    G  GC C S  +GA   +   + + H+   SS  RP+ P
Sbjct: 130 ASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATP 173


>AL161448-1|CAH73192.1|  509|Homo sapiens Src homology 2 domain
           containing adaptor protein B protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 145 AGDGDGWLGCACTSIISGAGGGTPCKACALHIGNGSSAMRPSFP 14
           A    G  GC C S  +GA   +   + + H+   SS  RP+ P
Sbjct: 130 ASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATP 173


>AL138752-4|CAI13876.1|  509|Homo sapiens Src homology 2 domain
           containing adaptor protein B protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 145 AGDGDGWLGCACTSIISGAGGGTPCKACALHIGNGSSAMRPSFP 14
           A    G  GC C S  +GA   +   + + H+   SS  RP+ P
Sbjct: 130 ASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATP 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,589,704
Number of Sequences: 237096
Number of extensions: 870021
Number of successful extensions: 2244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)