Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D13
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    27   3.8  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    27   3.8  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 130 GWLGCACTSIISGAGGGTPCKACALHIGNGSSA 32
           G+ G  CTS +  A   +PC++ A  + + SSA
Sbjct: 111 GYTGADCTSELGTACATSPCRSGATCVSSNSSA 143


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 118  CACTSIISGAGGGTPCKACALHIGNG 41
            C CT+I++       CK C +H+  G
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVHEG 1581


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 136 GDGWLGCACTSIISGAGGGTPCKAC 62
           G G  GC C     G GGG  C  C
Sbjct: 62  GCGCCGCGCGCCGCGGGGGGGCGCC 86



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 166 SSFVV*LAGDGDGWLGCACTSIISGAGGGTPCKAC 62
           SS V    G G    GC C     G GGG  C  C
Sbjct: 54  SSRVKRQGGCGCCGCGCGCCGCGGGGGGGCGCCCC 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,462
Number of Sequences: 27780
Number of extensions: 140571
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)