Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D12
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.91 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.2  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   2.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   2.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   2.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   3.7  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   4.9  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    24   6.4  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.5  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    24   8.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 71  PMQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLVRKHEWESAAKRASNRS 250
           P  PPP      +   A  PQ +P+P+   +  +E++ ++    RK     AA  A+  +
Sbjct: 778 PPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARKQ--RKAADDAARAA 835

Query: 251 WDK 259
            +K
Sbjct: 836 IEK 838


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 71   PMQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVE 190
            P   PP  QH  A   +  P D   P   +SP +  E V+
Sbjct: 1530 PSPAPPAPQHPSAAALSSAPADNSMPHR-SSPYAPQEPVQ 1568


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 177 SSLAGLVPSCGCGWSWGVSA 118
           + L G+ P+CG  + WG +A
Sbjct: 339 AGLVGITPACGFVFPWGAAA 358


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 128 PQDQPQPQEGTSPASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYK 301
           P D  +P E +SP SE +  E        +     R  ++ W  +  V  D + A Y+
Sbjct: 243 PLDSARPSESSSPYSEVDSAEEDDELFQNYVLQQTRKESKLWSFIKKVFHDIKYANYR 300


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 68  TPMQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGV 187
           T  QPPP  + S   D+ +T   QP   +   P   D  +
Sbjct: 612 TYSQPPPRWESSSRDDKTNTSSTQPSQVDSLVPTQLDSTI 651


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 200 VRKHEWESAAKRASNRSWDKVYVVAKDGRMAF 295
           V+   W + A+R    SW + Y V  D  M F
Sbjct: 423 VKITSWRTEARRKMVNSWRESYAVQNDAIMNF 454


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 244 VRSAFSRRLPFVFAY*CPLNTFILAGGTCALLRLWLVLG 128
           ++S  +   P +     P NT +  GG   L+++W + G
Sbjct: 96  IKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAG 134


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 196 CPLNTFILAGGTC-ALLRLW 140
           CP N F+LA G+     RLW
Sbjct: 198 CPKNEFVLASGSADGTCRLW 217


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = -1

Query: 288 MRPSLATTYTLSQDLLEARLA-ADSHSC-LRTNVPSTPSSSLA 166
           +R + +T  +L ++ + AR + ADS S   R +VPSTP +SL+
Sbjct: 627 LRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTPKASLS 669


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 78  SRRLWRSTVTRWTAPTHPKTNHNRRRAQVPPARMKVLRGH*YANTNGSL 224
           SRR   STV+      + ++   R+R  +  +R+K   GH   N +G L
Sbjct: 7   SRRTSSSTVSTDGEGVYSRSTKERKRNFIVNSRLKRGGGHVRVNRSGRL 55


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 203 RKHEWESAAKRASNRSWDKVYVVAKDGRM 289
           +K  W+++   +++    K YV+ K+G++
Sbjct: 220 KKGLWQASVTSSTHERKSKTYVITKNGKL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,873
Number of Sequences: 5004
Number of extensions: 21805
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)