Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D12
(366 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 63 5e-11
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 63 5e-11
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 63 5e-11
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 63 5e-11
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 63 5e-11
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 33 0.063
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 33 0.063
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 33 0.063
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 1.0
Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical pr... 29 1.3
U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc... 29 1.3
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 27 3.1
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 3.1
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 27 4.1
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 4.1
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 27 4.1
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 27 4.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 4.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 4.1
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 27 4.1
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 27 4.1
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 27 4.1
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 4.1
Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical pr... 27 5.4
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 27 5.4
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 27 5.4
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 26 7.2
AL110485-33|CAN86916.1| 360|Caenorhabditis elegans Hypothetical... 26 7.2
AL110485-32|CAB60360.1| 375|Caenorhabditis elegans Hypothetical... 26 7.2
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 26 9.5
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 26 9.5
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 26 9.5
AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical ... 26 9.5
AC024750-2|AAF60439.1| 234|Caenorhabditis elegans Hypothetical ... 26 9.5
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 26 9.5
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 167 ASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYNASPDQYWRG 346
A + E EGTL+RKH +ES ++A+NRSW+K+Y V + ++FYKD K D+ G
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDPK----HRDESVHG 2169
Query: 347 EAPLDL 364
E P+ L
Sbjct: 2170 EPPMAL 2175
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 167 ASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYNASPDQYWRG 346
A + E EGTL+RKH +ES ++A+NRSW+K+Y V + ++FYKD K D+ G
Sbjct: 2159 AKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDPK----HRDESVHG 2214
Query: 347 EAPLDL 364
E P+ L
Sbjct: 2215 EPPMAL 2220
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 167 ASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYNASPDQYWRG 346
A + E EGTL+RKH +ES ++A+NRSW+K+Y V + ++FYKD K D+ G
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDPK----HRDESVHG 2169
Query: 347 EAPLDL 364
E P+ L
Sbjct: 2170 EPPMAL 2175
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 167 ASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYNASPDQYWRG 346
A + E EGTL+RKH +ES ++A+NRSW+K+Y V + ++FYKD K D+ G
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDPK----HRDESVHG 2169
Query: 347 EAPLDL 364
E P+ L
Sbjct: 2170 EPPMAL 2175
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 63.3 bits (147), Expect = 5e-11
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 167 ASEDEGVEGTLVRKHEWESAAKRASNRSWDKVYVVAKDGRMAFYKDQKAYNASPDQYWRG 346
A + E EGTL+RKH +ES ++A+NRSW+K+Y V + ++FYKD K D+ G
Sbjct: 2159 AKQGEAFEGTLIRKHTYESLDRKAANRSWEKLYAVLRQNELSFYKDPK----HRDESVHG 2214
Query: 347 EAPLDL 364
E P+ L
Sbjct: 2215 EPPMAL 2220
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 33.1 bits (72), Expect = 0.063
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 89 VAQHSDAVDRADTPQDQPQPQEGTSPAS--EDEG---VEGTLVRKHEWESAAKRASNRSW 253
VA V+ TP + + S ED G ++G RK +S KRA+ RSW
Sbjct: 3640 VAPLQSGVEMTKTPSFNTRRTQSIRKGSRWEDMGAIDMKGFFDRKQCQQSGGKRATIRSW 3699
Query: 254 DKVYVVAKDGRMAFYKDQKAY 316
Y + + F+KD++ +
Sbjct: 3700 KNYYGILCGQLLCFFKDEQQF 3720
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 33.1 bits (72), Expect = 0.063
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 89 VAQHSDAVDRADTPQDQPQPQEGTSPAS--EDEG---VEGTLVRKHEWESAAKRASNRSW 253
VA V+ TP + + S ED G ++G RK +S KRA+ RSW
Sbjct: 3640 VAPLQSGVEMTKTPSFNTRRTQSIRKGSRWEDMGAIDMKGFFDRKQCQQSGGKRATIRSW 3699
Query: 254 DKVYVVAKDGRMAFYKDQKAY 316
Y + + F+KD++ +
Sbjct: 3700 KNYYGILCGQLLCFFKDEQQF 3720
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 33.1 bits (72), Expect = 0.063
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 89 VAQHSDAVDRADTPQDQPQPQEGTSPAS--EDEG---VEGTLVRKHEWESAAKRASNRSW 253
VA V+ TP + + S ED G ++G RK +S KRA+ RSW
Sbjct: 3640 VAPLQSGVEMTKTPSFNTRRTQSIRKGSRWEDMGAIDMKGFFDRKQCQQSGGKRATIRSW 3699
Query: 254 DKVYVVAKDGRMAFYKDQKAY 316
Y + + F+KD++ +
Sbjct: 3700 KNYYGILCGQLLCFFKDEQQF 3720
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 164 PASEDEGVEGTLVRKHEWESAAKRASNRSWD 256
P + DE ++ ++R W K+A+NR WD
Sbjct: 1948 PHAMDEMLDTIVLRNPNWSIEEKKAANRYWD 1978
>Z83228-9|CAB05737.2| 539|Caenorhabditis elegans Hypothetical
protein F52F12.6 protein.
Length = 539
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 198 NVPSTPSSSLA--GLVPSCGCGWSWGVSARSTASLCCATGGGCIG 70
++ +TP+ + G +PS G G+SW S R L C T GC G
Sbjct: 231 SISTTPTVAFTPNGSIPSPGTGYSW--SIRREGKLACPT-PGCDG 272
>U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc
finger proteinC.e-MyT1 protein.
Length = 539
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 198 NVPSTPSSSLA--GLVPSCGCGWSWGVSARSTASLCCATGGGCIG 70
++ +TP+ + G +PS G G+SW S R L C T GC G
Sbjct: 231 SISTTPTVAFTPNGSIPSPGTGYSW--SIRREGKLACPT-PGCDG 272
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 71 PMQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDE 181
P PPP Q + PQ +PQP+ P E +
Sbjct: 97 PPPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQ 133
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 71 PMQPPPVAQHSDAVDRADT-PQDQPQPQEGTSPASEDE 181
P PPP + R + P+ QP+PQ P + E
Sbjct: 98 PPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQPE 135
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical protein
R134.1 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 83 PPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLVRKHEWES 223
PPV Q V DTP+ + G+ P+S L R+++ ++
Sbjct: 1091 PPVTQERFTVRAPDTPEARSVSSHGSRPSSNHNNNNDPLYRQYKMDT 1137
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 95 QHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLVRKH 211
+H + V A T +DQ +P + + + VEG + H
Sbjct: 354 EHKEEVAAAATSEDQKEPAPASDEHTSESAVEGAIESVH 392
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 80 PPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLV 202
P P+ V+ +P+D P+P + P +E E T V
Sbjct: 1168 PEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPV 1208
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 80 PPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLV 202
P P+ V+ +P+D P+P + P +E E T V
Sbjct: 1168 PEPLEVPERQVENLPSPEDTPRPSDPLKPNGTNESKESTPV 1208
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 93 RSTVTRWTAPTHPKTNHNRRRAQVPPA 173
R+ + R TAP+ +++R RA VPPA
Sbjct: 939 RNYIARATAPSPTPYSYDRARAYVPPA 965
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 27.1 bits (57), Expect = 4.1
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Frame = +2
Query: 113 DRAD-TPQDQPQPQEGTSPASEDEGVE--GTLVRKHEWESAAK--RASNRSWDKVYVVAK 277
D AD TP + + + G+ E G L R E A K + R W Y+
Sbjct: 362 DSADFTPSSRCEERRGSGDGREPVRTIRCGDLERSENDEPAEKVVKPKKREWITNYMYLT 421
Query: 278 DGRMAFYKDQKAYNASPDQYWRGEAPLDL 364
+ YKDQK+ Y + DL
Sbjct: 422 TAHLILYKDQKSAEKHGKHYDAPQGVWDL 450
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 282 PSLATTYTLSQDLL--EARLAADSHSCLRTNVPSTPSSS 172
PS+A++ + D L +A+ A S+SC +PS P S+
Sbjct: 466 PSIASSISFDYDCLAKDAKSARRSNSCPPIEIPSPPPSN 504
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 ADTPQDQPQPQEGTSPASEDEGVEGTLVRKH--EWESAAKRASNRSWDKVYVVAKDGRMA 292
A T + QPQ P S E G L+RK+ E + RSW VY A+ +
Sbjct: 497 ASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGRRSWRMVY--ARLRGLV 554
Query: 293 FYKDQKAYNASPDQY 337
Y D + + +Y
Sbjct: 555 LYFDTDEHPKATSRY 569
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 ADTPQDQPQPQEGTSPASEDEGVEGTLVRKH--EWESAAKRASNRSWDKVYVVAKDGRMA 292
A T + QPQ P S E G L+RK+ E + RSW VY A+ +
Sbjct: 550 ASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGRRSWRMVY--ARLRGLV 607
Query: 293 FYKDQKAYNASPDQY 337
Y D + + +Y
Sbjct: 608 LYFDTDEHPKATSRY 622
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 116 RADTPQDQPQPQEGTSPASEDEGVEGTLVRKHEWES 223
R++TP D+ + +EG PA + E + K E+
Sbjct: 12779 RSETPDDKSRKKEGLPPAKKSEKKDEVTAEKQSTEA 12814
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 116 RADTPQDQPQPQEGTSPASEDEGVEGTLVRKHEWES 223
R++TP D+ + +EG PA + E + K E+
Sbjct: 12779 RSETPDDKSRKKEGLPPAKKSEKKDEVTAEKQSTEA 12814
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 ADTPQDQPQPQEGTSPASEDEGVEGTLVRKH--EWESAAKRASNRSWDKVYVVAKDGRMA 292
A T + QPQ P S E G L+RK+ E + RSW VY A+ +
Sbjct: 497 ASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGRRSWRMVY--ARLRGLV 554
Query: 293 FYKDQKAYNASPDQY 337
Y D + + +Y
Sbjct: 555 LYFDTDEHPKATSRY 569
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 ADTPQDQPQPQEGTSPASEDEGVEGTLVRKH--EWESAAKRASNRSWDKVYVVAKDGRMA 292
A T + QPQ P S E G L+RK+ E + RSW VY A+ +
Sbjct: 550 ASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGRRSWRMVY--ARLRGLV 607
Query: 293 FYKDQKAYNASPDQY 337
Y D + + +Y
Sbjct: 608 LYFDTDEHPKATSRY 622
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +2
Query: 119 ADTPQDQPQPQEGTSPASEDEGVEGTLVRKH--EWESAAKRASNRSWDKVYVVAKDGRMA 292
A T + QPQ P S E G L+RK+ E + RSW VY A+ +
Sbjct: 548 ASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGRRSWRMVY--ARLRGLV 605
Query: 293 FYKDQKAYNASPDQY 337
Y D + + +Y
Sbjct: 606 LYFDTDEHPKATSRY 620
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 168 AGLVPSCGCGWSWGVSARSTASLCCATGGGC 76
AG SC G+ SA+ CC GGC
Sbjct: 1155 AGEAKSCPTGFFCQFSAKKGQFQCCGQSGGC 1185
>Z78541-3|CAD44120.1| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 233 RASNRSWDKVYVVAKDGRMAFYKDQKA 313
R + + W++ Y V K G + YK +KA
Sbjct: 49 RGALKRWNRYYCVLKPGLLILYKHKKA 75
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 26.6 bits (56), Expect = 5.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 77 QPPPVAQHSDAVDRADTPQDQPQPQE-GTSPASE-DEGVEGTLVRKHEWESAAKRASNRS 250
+PP +DAV + + ++ +P+E S SE E + +K E + K SN++
Sbjct: 63 EPPKAPPPADAVKKIEEKGEEKKPEEPAKSKKSEKKEKSKNEGSKKEEDKEKEKEKSNKA 122
Query: 251 WDK 259
DK
Sbjct: 123 EDK 125
>Z70269-4|CAA94223.2| 733|Caenorhabditis elegans Hypothetical
protein ZK1086.1a protein.
Length = 733
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 233 RASNRSWDKVYVVAKDGRMAFYKDQKA 313
R + + W++ Y V K G + YK +KA
Sbjct: 49 RGALKRWNRYYCVLKPGLLILYKHKKA 75
>Z70269-1|CAD44161.1| 770|Caenorhabditis elegans Hypothetical
protein ZK1086.1b protein.
Length = 770
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 233 RASNRSWDKVYVVAKDGRMAFYKDQKA 313
R + + W++ Y V K G + YK +KA
Sbjct: 86 RGALKRWNRYYCVLKPGLLILYKHKKA 112
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 77 QPPPVAQHSDAVDRADTPQDQPQ 145
QPPP++ S D+ +TP+ Q Q
Sbjct: 80 QPPPISASSAHQDQPETPETQDQ 102
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 77 QPPPVAQHSDAVDRADTPQDQPQ 145
QPPP++ S D+ +TP+ Q Q
Sbjct: 80 QPPPISASSAHQDQPETPETQDQ 102
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
T11G6.5 protein.
Length = 1406
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 267 TYTLSQDLLEARLAADSHSCLRTNVPSTPSSSLAGLVP 154
T + S D + A+D S R N+PST SSS+ L P
Sbjct: 1102 TASPSIDKEDGEWASDDESRERKNLPSTSSSSVIILSP 1139
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 267 TYTLSQDLLEARLAADSHSCLRTNVPSTPSSSLAGLVP 154
T + S D + A+D S R N+PST SSS+ L P
Sbjct: 1102 TASPSIDKEDGEWASDDESRERKNLPSTSSSSVIILSP 1139
>AL110485-33|CAN86916.1| 360|Caenorhabditis elegans Hypothetical
protein Y46G5A.18b protein.
Length = 360
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 255 SQDLLEARLAADSHSCLRTNVPSTP---SSSLAGLVPSC 148
S+D +E R + S L+ P TP S S +G+V SC
Sbjct: 141 SRDEMEQRRILNGTSKLQQKTPDTPTTSSGSASGIVTSC 179
>AL110485-32|CAB60360.1| 375|Caenorhabditis elegans Hypothetical
protein Y46G5A.18a protein.
Length = 375
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 255 SQDLLEARLAADSHSCLRTNVPSTP---SSSLAGLVPSC 148
S+D +E R + S L+ P TP S S +G+V SC
Sbjct: 141 SRDEMEQRRILNGTSKLQQKTPDTPTTSSGSASGIVTSC 179
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 25.8 bits (54), Expect = 9.5
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 155 GTSPASEDEGVEGTLVRKHEWESAAKRAS---NRSWDKVYVVAKDGRMAFYKDQKAYNAS 325
GT+PA+EDE +E K + E A ++ + +R + V+ ++ D +AY+
Sbjct: 852 GTAPAAEDEKMEVDQPGKSKKEKAPEKDTKPLHRLQNPARVIPAQRQLISISDARAYSPM 911
Query: 326 PDQYWRG 346
Y G
Sbjct: 912 KPLYKGG 918
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 25.8 bits (54), Expect = 9.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 77 QPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGTLVRK--HEWESAAK 232
+ P A+ V+ + P+ +P QE PA E L K HE E AAK
Sbjct: 39 EEPEAAEEEAPVE--EKPKPRPPVQEEKPPAEMTEAEAAMLAAKKRHEEEEAAK 90
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 74 MQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGT 196
+QPPP+ S +++++ P Q PA + G+ T
Sbjct: 1269 LQPPPLLPRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMST 1309
>AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical
protein W02F12.3 protein.
Length = 388
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 95 QHSDAVDRADTPQDQPQPQEGTSPASE 175
QH +AV DTP +P E S E
Sbjct: 268 QHQNAVGSGDTPSTRPSTAENNSDHGE 294
>AC024750-2|AAF60439.1| 234|Caenorhabditis elegans Hypothetical
protein Y17G9A.3 protein.
Length = 234
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 197 LVRKHEWESAAKRASNRSWDKVYVVAKD 280
+ R H W S +KRA N ++V ++ +
Sbjct: 134 IYRSHYWRSTSKRAKNNIENEVKIICAE 161
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 74 MQPPPVAQHSDAVDRADTPQDQPQPQEGTSPASEDEGVEGT 196
+QPPP+ S +++++ P Q PA + G+ T
Sbjct: 1269 LQPPPLLPRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMST 1309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,959,300
Number of Sequences: 27780
Number of extensions: 140107
Number of successful extensions: 904
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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