Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D10
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 125 7e-31
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 85 2e-18
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 85 2e-18
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 84 3e-18
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 84 3e-18
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 51 2e-08
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 7e-04
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 1.8
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 24 2.4
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 24 2.4
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 23 4.2
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 23 4.2
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 23 4.2
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 23 5.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 5.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 5.6
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 23 5.6
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 23 7.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 7.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 7.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 22 9.7
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 22 9.7
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 22 9.7
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 125 bits (302), Expect = 7e-31
Identities = 61/62 (98%), Positives = 61/62 (98%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 190
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SD
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97
Query: 191 TI 196
TI
Sbjct: 98 TI 99
Score = 125 bits (302), Expect = 7e-31
Identities = 61/62 (98%), Positives = 61/62 (98%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 190
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SD
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
Query: 191 TI 196
TI
Sbjct: 174 TI 175
Score = 125 bits (302), Expect = 7e-31
Identities = 61/62 (98%), Positives = 61/62 (98%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 190
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SD
Sbjct: 190 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 249
Query: 191 TI 196
TI
Sbjct: 250 TI 251
Score = 125 bits (302), Expect = 7e-31
Identities = 61/62 (98%), Positives = 61/62 (98%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSD 190
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SD
Sbjct: 266 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 325
Query: 191 TI 196
TI
Sbjct: 326 TI 327
Score = 84.6 bits (200), Expect = 2e-18
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 130
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 342 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
Score = 46.0 bits (104), Expect = 7e-07
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
MQIFVKTLTGKTITLEVE SDTI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTI 23
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 84.6 bits (200), Expect = 2e-18
Identities = 42/51 (82%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLTGK 160
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 46.0 bits (104), Expect = 7e-07
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
MQIFVKTLTGKTITLEVE SDTI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTI 23
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 84.6 bits (200), Expect = 2e-18
Identities = 42/51 (82%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLTGK 160
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 46.0 bits (104), Expect = 7e-07
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
MQIFVKTLTGKTITLEVE SDTI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTI 23
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.8 bits (198), Expect = 3e-18
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 127
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 46.0 bits (104), Expect = 7e-07
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
MQIFVKTLTGKTITLEVE SDTI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTI 23
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.8 bits (198), Expect = 3e-18
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 127
PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 46.0 bits (104), Expect = 7e-07
Identities = 22/23 (95%), Positives = 22/23 (95%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
MQIFVKTLTGKTITLEVE SDTI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTI 23
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 50.8 bits (116), Expect = 2e-08
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 127
P QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG
Sbjct: 38 PSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
Score = 31.1 bits (67), Expect = 0.021
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 128 MQIFVKTLTGKTITLEVEPSDTI 196
M I VKTLTGK I L+++P+D +
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKV 23
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.9 bits (79), Expect = 7e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 14 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 118
++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 42 ERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 53 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 172
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 139 KYLHSTSQTKDQVEGRFFLNVIIRKSPAIFKLLSSKNQ 26
K + T +T G L +KSP FK++ SKN+
Sbjct: 595 KNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNR 632
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +1
Query: 79 HSERIYPPLGPSSERWNANICEDPHWQDY 165
H++R +PP+ P + + HW+ Y
Sbjct: 377 HNDRAHPPIHPVQMVHRSALPSQDHWKVY 405
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +1
Query: 109 PSSERWNANICEDPHWQDYHP 171
P+ RWN D H +HP
Sbjct: 13 PTLSRWNPMFISDVHKISFHP 33
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 30 FLLESNLKMAGLFLIITFRKNLPSTWSFV 116
F +SNL M G+ F + + STWS +
Sbjct: 882 FWSDSNLDMQGITQKYRFLELITSTWSAI 910
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 139 KYLHSTSQTKDQVEGRFFLNVI-IRKSPAIFKLLSSK 32
K + T+ T +Q+EG LNV+ + K + L SK
Sbjct: 330 KIIERTNATNEQIEGLMGLNVLRVWKKTELVALQLSK 366
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 131 AFHLSDEGPSGG*ILSECYNQKESGHLQVAFQQKSVFA 18
A HLS S ++ E Y++ + L V K VFA
Sbjct: 506 AKHLSHNYGSRAPLILELYSKTDFNKLPVTLADKEVFA 543
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 41 KQLEDGRTLSDYNIQKESTL 100
KQL+DG+ +SD E TL
Sbjct: 4366 KQLQDGQDISDIKQTGEDTL 4385
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 11 PDQQRLIFAGKQLEDGRTLSDYNI 82
P+Q AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 137 IFAFHLSDEGPSGG*ILSECYNQKESGHLQVAFQQKSVFAGQE 9
++A ++ D G G ++ EC N S Q A+ F G+E
Sbjct: 463 LYAVYVEDAG--GMDLIHECQNSSNSEIYQKAYNIIEKFFGEE 503
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 145 LHKYLHSTSQT 113
LHK+LH +SQT
Sbjct: 137 LHKWLHESSQT 147
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 100 PLGPSSERWNANICEDPHWQDYHP 171
P+ PSS+ W+ ++ P Y P
Sbjct: 1860 PISPSSDTWDRDVEFYPSQNGYDP 1883
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 181 LHLKGDSLASEGLHKYLHSTSQT 113
+HL+ +A EGL+ Y ++ T
Sbjct: 60 VHLRKGKIAKEGLYTYKNAVQNT 82
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 77 NIQKESTLHLVLRL 118
N+ KES LH++L+L
Sbjct: 353 NLSKESRLHILLQL 366
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/44 (20%), Positives = 21/44 (47%)
Frame = -2
Query: 145 LHKYLHSTSQTKDQVEGRFFLNVIIRKSPAIFKLLSSKNQSLLV 14
+++YL +T Q + N + + PA+ + ++ LL+
Sbjct: 243 VYRYLVNTGQLSPSEDDNLLTNEEVSEFPAVKNAIQERSAQLLL 286
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 22.2 bits (45), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 151 EGLHKYLHSTSQTKDQVEGRFFLNVIIRKSPAIFKLLSSKNQ 26
E L+ S + K E R +LN+++ K P + L KN+
Sbjct: 79 ECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNR 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,677
Number of Sequences: 5004
Number of extensions: 13549
Number of successful extensions: 54
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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