Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D08
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 312 3e-86
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 166 2e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 157 1e-39
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 93 2e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 1e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 81 1e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 49 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.020
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 7.2
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 312 bits (765), Expect = 3e-86
Identities = 145/172 (84%), Positives = 158/172 (91%)
Frame = +1
Query: 10 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDINEKLCYVALDFE 189
IYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDI EKLCYVALDFE
Sbjct: 165 IYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFE 224
Query: 190 QEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMK 369
QE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMK
Sbjct: 225 QELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMK 284
Query: 370 CDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPPRKE 525
CDVDIRKDLY N VMSGGTTMYPGIADRMQKEI LAPS++K+KI+APP ++
Sbjct: 285 CDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERK 336
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 166 bits (404), Expect = 2e-42
Identities = 75/156 (48%), Positives = 107/156 (68%)
Frame = +1
Query: 10 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDINEKLCYVALDFE 189
+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++ EKLCYV+ D E
Sbjct: 165 VYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLE 224
Query: 190 QEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMK 369
+ + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I
Sbjct: 225 LDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQA 284
Query: 370 CDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXL 477
DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 285 ADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 157 bits (380), Expect = 1e-39
Identities = 70/171 (40%), Positives = 108/171 (63%)
Frame = +1
Query: 10 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDINEKLCYVALDFE 189
IY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+I EK CYVA DF
Sbjct: 170 IYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFR 229
Query: 190 QEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMK 369
E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G+H ++ SI+
Sbjct: 230 SEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILL 289
Query: 370 CDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPPRK 522
D+D+R LY+N V+SGG+T+ G +R E+ ++ ++KI A P +
Sbjct: 290 SDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPER 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 93.5 bits (222), Expect = 2e-20
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Frame = +1
Query: 37 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDINEKLCYVALDFEQEMATAAAS 216
A+ R+D+ G+ LT+YL ++++ R Y+ E IV +I E +CYV+ +F+++M
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEK 239
Query: 217 --TSLEKSYELPD------------------GQVITIGNERFRCPEALFQPSFLGMESCG 336
+ LE Y LPD QV+ + NERF PE LF PS + + G
Sbjct: 240 PRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAG 299
Query: 337 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAP 513
I E V S+ +I+ L N V GG +PG R+ E+ LAP+ ++K+ P
Sbjct: 300 IPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEP 358
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.8 bits (198), Expect = 1e-17
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Frame = +1
Query: 112 SFTTTAEREIVRDINEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 291
S+ +R ++ + E + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 292 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 444
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 445 ADRMQKEITXLA 480
++R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 81.0 bits (191), Expect = 1e-16
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Frame = +1
Query: 10 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDINEKLCYVALD 183
+ EGY + +I + LAGRD+T ++ +L +R S TAER I E+ CYV D
Sbjct: 196 VAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPD 250
Query: 184 FEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGMESCG-IHET 348
+E + L+ + E G TI G ERF PE F P + + E
Sbjct: 251 IVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPEL 310
Query: 349 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTI 492
V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 311 VDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERI 358
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 49.2 bits (112), Expect(2) = 2e-11
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 334 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIA 510
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHA 383
Score = 34.3 bits (75), Expect(2) = 2e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 205 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 309
++ +T E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.0 bits (124), Expect = 1e-08
Identities = 22/77 (28%), Positives = 46/77 (59%)
Frame = +1
Query: 274 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 453
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 454 MQKEITXLAPSTIKIKI 504
+++E+T + P I +
Sbjct: 654 IKRELTSIMPVGSSINV 670
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 388 KDLYANTVMSGGTTMYPGIADRMQKEITXLAPSTIKIKIIAPPR 519
K+LY++ ++ GG +PG A +++ I + I +I PPR
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPR 570
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +1
Query: 10 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 117
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 11 STKVTPCPTPSSVWTW 58
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 206 HMPPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 219 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 232 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 245 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 258 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 271 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 284 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 297 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 429 HVPRYRRQDAEGDHRPRS-LHHQDQDHRSPP 518
H+P G+H P +HH+ +H PP
Sbjct: 310 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 166 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 291
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,870
Number of Sequences: 5004
Number of extensions: 38291
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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