Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D07
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    56   2e-09
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   0.40 
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    26   1.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   2.8  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    25   2.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   3.7  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   4.9  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   8.6  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   8.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    24   8.6  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
 Frame = +3

Query: 9   VRRVDNVWKVKHEHAQTGQKFEED-YEYVIVGNGHFSKPNLPNIPGENLFE----GTIIH 173
           + + D  W V ++  + G    +D ++ V + NGH+  P +PNI G + +     G+++H
Sbjct: 141 IEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLH 200

Query: 174 SHDYREPDPYTNRRVLVIGAGPSGMDIGLDVAELSK 281
           S  +REP+ +    VLV+G   S  D+   +  ++K
Sbjct: 201 SSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236



 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 204 TNRRVLVIGAGPSGM 248
           T R++ +IGAGPSG+
Sbjct: 5   TIRKIAIIGAGPSGL 19


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 186  REPDPYTNRRVLVIGAGPSGM 248
            R P   T RRV +IG+GP+G+
Sbjct: 1748 RPPAERTGRRVAIIGSGPAGL 1768


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 186 REPDPYTNRRVLVIGAGPSGMDIGLDVAELSKTLVHSHHSKV 311
           R+PD Y +R      AG SG  I + V E    LVH+   +V
Sbjct: 337 RDPDDYIHRVGRTARAGRSGESISI-VTERDVDLVHAIEDRV 377


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 186 REPDPYTNRRVLVIGAGPSGMDIGLDVAELSKTLVHSHHS 305
           R P+ +       +G G SG+D   + AE     + SH+S
Sbjct: 420 RRPNTFRTNSSKSVGQGSSGVDSNQENAESFNPSISSHNS 459


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 364 SLTSALLM*FGGKAVRKFTLEW*LCTRVLLNSATSSPMSI 245
           SLT A+ + F  K + +FT    L TRV L+ +   P+ +
Sbjct: 198 SLTQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLV 237


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 160  PSKRFSPGIFGKLGLLKCPLPTITYS*SSSNFCPVCACSCL 38
            P   F  GI+   GLL C L +++ S + + FC + +C  L
Sbjct: 938  PKPYFYLGIYTLFGLLSCALISLS-SLTITVFCAIKSCRYL 977


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 78  DYEYVIVGNGHFSKPNLPNIPGENLF-EGTIIHSHDYREPDPYTNRRVLVIGAGPSGMDI 254
           D   VI+  G  + P L ++  E++F E TII S     P       +  IG+G     I
Sbjct: 354 DISEVILAGGASNTPKLTSLM-ESIFPEQTIIRSSSSVTPLQLDPSELTAIGSGVQASLI 412

Query: 255 G-LDVAELS 278
           G  D A+++
Sbjct: 413 GHFDAADIA 421


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 237 PSGMDIGLDVAELSKTLVHSHHSKVNFRTAFPPNYINKADV 359
           P+ +D    +    + L        + RTA P  Y+N  +V
Sbjct: 426 PANLDYSSAIQRAQERLTLEESKLTDLRTAEPSQYVNDVEV 466


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 294 SHHSKVNFRTAFPP 335
           SHH K   RT+FPP
Sbjct: 359 SHHLKSPVRTSFPP 372


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 33  KVKHEHAQTGQKFEEDYEYVIVGNG 107
           K++    QTG+    +YE+VI G+G
Sbjct: 315 KLRLPQLQTGKILRWEYEFVIHGHG 339


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 152 KIFSRNIWQIGFTKVSITHNYIFVVLLKFLSSLCVLVFD 36
           K+F   +WQ   T++S+ H  +  +LL + S    + +D
Sbjct: 56  KLFENFLWQRVNTEMSLNHINLTCMLLLYKSKYEYITWD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,402
Number of Sequences: 5004
Number of extensions: 35542
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)