Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D06
(446 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 153 5e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 148 2e-36
03_01_0548 + 4099386-4099847,4100435-4101316 31 0.32
03_01_0547 + 4093196-4093657,4094267-4095148 31 0.32
03_01_0544 + 4082528-4082989,4083585-4084466 31 0.32
03_01_0543 + 4076981-4077442,4078145-4079026 31 0.32
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 29 2.3
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 3.0
10_02_0110 - 5371536-5372882 27 9.1
03_02_0314 + 7398247-7400877 27 9.1
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 153 bits (372), Expect = 5e-38
Identities = 73/94 (77%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
Frame = +2
Query: 128 EIKLFGRWSCYDVQVSDMSLQDYIAVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 304
E+KLF RWS DVQV+D+SL DY+AV K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 305 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG*KP 406
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT P
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANP 103
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 402 NPLQVLVTAIINSGP 446
NP+QV+V AIINSGP
Sbjct: 102 NPIQVIVDAIINSGP 116
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 148 bits (358), Expect = 2e-36
Identities = 70/93 (75%), Positives = 79/93 (84%), Gaps = 1/93 (1%)
Frame = +2
Query: 131 IKLFGRWSCYDVQVSDMSLQDYIAVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 307
+KLF WS DVQV+D+SL DY+AV K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 308 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTG*KP 406
LMMHGRNNGKK+MAVRIVKHA EIIHLLT P
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANP 104
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 402 NPLQVLVTAIINSGP 446
NP+QV+V AIINSGP
Sbjct: 103 NPIQVIVDAIINSGP 117
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 97 VVHNHAARVGDFFGPVLLSHISHFYSQFTNLV 2
++ NH ++G+ + PVL H SH +F LV
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELV 364
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 97 VVHNHAARVGDFFGPVLLSHISHFYSQFTNLV 2
++ NH ++G+ + PVL H SH +F LV
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELV 364
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 97 VVHNHAARVGDFFGPVLLSHISHFYSQFTNLV 2
++ NH ++G+ + PVL H SH +F LV
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELV 364
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 97 VVHNHAARVGDFFGPVLLSHISHFYSQFTNLV 2
++ NH ++G+ + PVL H SH +F LV
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELV 364
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 59 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYIAVKEKYAKYLP 232
+E+ G MVV L + +D P+ +L W+ +SDM+L+ I+ ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 287 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG*KPSAS 415
+ L ++HG N ++++AV +K +I+HLL G + S +
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRGLRSSTN 1370
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 53 WTEEVADAGGMVVDNMPLPQPADIPEIKL 139
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>03_02_0314 + 7398247-7400877
Length = 876
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 442 PELIIAVTRTCRGFSPGQQVNNFKGMF 362
PE+ IA T C G+S Q+V + K F
Sbjct: 729 PEISIANTDNCNGWSASQEVKDDKPYF 755
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,180
Number of Sequences: 37544
Number of extensions: 245887
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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