Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D06
(446 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 157 5e-39
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.29
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 31 0.29
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 31 0.29
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 2.7
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 2.7
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 157 bits (380), Expect = 5e-39
Identities = 79/120 (65%), Positives = 88/120 (73%)
Frame = +2
Query: 47 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYIAVKEKYAKY 226
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 227 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG*KP 406
LPHSAGR+ +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTG P
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114
Score = 34.7 bits (76), Expect = 0.031
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 396 GENPLQVLVTAIINSGP 446
GENP+QVLV A+INSGP
Sbjct: 111 GENPVQVLVNAVINSGP 127
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 31.5 bits (68), Expect = 0.29
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = -2
Query: 439 ELIIAVTRTCRGFSPGQQVNNFKGMFNDTYSHKFLTIIAAVHH*GVSQTLHNRALSFTES 260
+++ R+ G SP ++ F F I+ V G + L+ S
Sbjct: 217 DMVDVCFRSAFGVSPPLRIYKFVFFFTLLIIFFSALILKVVEFVGTGEIFGEHILTDC-S 275
Query: 259 FVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHNH 83
F+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 276 FILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITNV 335
Query: 82 AARVGDFFGPVLL 44
VGD F P+LL
Sbjct: 336 QEAVGDVFNPLLL 348
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 31.5 bits (68), Expect = 0.29
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = -2
Query: 439 ELIIAVTRTCRGFSPGQQVNNFKGMFNDTYSHKFLTIIAAVHH*GVSQTLHNRALSFTES 260
+++ R+ G SP ++ F F I+ V G + L+ S
Sbjct: 183 DMVDVCFRSAFGVSPPLRIYKFVFFFTLLIIFFSALILKVVEFVGTGEIFGEHILTDC-S 241
Query: 259 FVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHNH 83
F+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 242 FILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITNV 301
Query: 82 AARVGDFFGPVLL 44
VGD F P+LL
Sbjct: 302 QEAVGDVFNPLLL 314
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 31.5 bits (68), Expect = 0.29
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = -2
Query: 439 ELIIAVTRTCRGFSPGQQVNNFKGMFNDTYSHKFLTIIAAVHH*GVSQTLHNRALSFTES 260
+++ R+ G SP ++ F F I+ V G + L+ S
Sbjct: 217 DMVDVCFRSAFGVSPPLRIYKFVFFFTLLIIFFSALILKVVEFVGTGEIFGEHILTDC-S 275
Query: 259 FVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHNH 83
F+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 276 FILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITNV 335
Query: 82 AARVGDFFGPVLL 44
VGD F P+LL
Sbjct: 336 QEAVGDVFNPLLL 348
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 48 RTGPKKSPTRAAWLWTTCHYHS 113
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 48 RTGPKKSPTRAAWLWTTCHYHS 113
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 132 SNFLGDGVVMTFKYRTCLCR 191
SN+L DG V+ +K + C CR
Sbjct: 124 SNYLEDGDVLGYKLKPCFCR 143
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 271 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 149
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 271 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 149
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -2
Query: 124 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 26
+ S W WH+ H DFFG S S F
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74
>Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical
protein T05E12.4 protein.
Length = 345
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = -2
Query: 397 PGQQVNNFKGMFNDTYSHKFLTIIAAVHH*GVSQTLHNRALSFTESFVSVPASRMW*IFC 218
PGQ + F + YS +++AV V +HNR E VSV S IF
Sbjct: 95 PGQLMALFYSITRK-YSVWLAVVMSAVRTLSVLFPMHNRIQKINEKTVSVRISIAVFIFV 153
Query: 217 ILLFYRNIILQRHVRYL 167
+ + + + + +++L
Sbjct: 154 MFVDFTELAMTYRIKWL 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,483,913
Number of Sequences: 27780
Number of extensions: 219527
Number of successful extensions: 467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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