Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D05
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.0  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    23   5.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   7.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    23   7.0  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    23   9.2  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 96  VYEKFETTAHSIPALSLVDRFN 31
           V EKF +  +SIP L++VD  +
Sbjct: 114 VLEKFRSGEYSIPNLNIVDELH 135


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 56  RCHWSIGLTNARL 18
           R HWSIG+T  RL
Sbjct: 413 RLHWSIGVTLERL 425


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 20  DARSLNRSTNDSAGIECAVVSNFSYTRIIPSTTI 121
           D +SL   T +   +E    + + Y RI PSTT+
Sbjct: 454 DLQSLPTPTLEQ--LESVPFNRYGYVRIFPSTTL 485


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 120 YIFCVTYIYVKIVVSFNNXXXXXXXXXXXXXXXRNVDLIIRFL 248
           YIF         ++SFNN               RN+   IRFL
Sbjct: 303 YIFYAPLYLAGPIISFNNFMSQMKYPTVSTLKYRNLLYAIRFL 345


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 132 RRIYMVVDGIILVYEKFETTAHSIPA 55
           RR+  V+DG +LV++  + T  ++ A
Sbjct: 49  RRVVKVLDGRVLVFDPPDETTATLSA 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 945,415
Number of Sequences: 5004
Number of extensions: 15416
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)