Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D05
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    26   3.6  
03_06_0247 + 32632495-32633619                                         26   4.8  
11_02_0068 + 7991816-7992603,7995209-7997177                           25   8.3  

>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 120  MVVDGIILVYEKFETTAHSIPALSLVDRFNERASE 16
            M ++ ++   E+++ T H +P+L  V+R   R  E
Sbjct: 1491 MTLETLLHDEERYQETVHDVPSLQQVNRMIARTEE 1525


>03_06_0247 + 32632495-32633619
          Length = 374

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 114 VDGIILVYEKFETTAHSIPALS 49
           +DG+ L+Y+    T   IPALS
Sbjct: 116 IDGVYLIYDTIGKTLSMIPALS 137


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 62  IECAVVSNFSYTRIIPSTTIYILRDL 139
           IECA+V N   +RII +T I+ +  L
Sbjct: 280 IECALVKNCRGSRIITTTRIHDIAKL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,687,137
Number of Sequences: 37544
Number of extensions: 83312
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)