Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D05
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical pr...    28   0.79 
U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl transfe...    27   1.8  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    25   5.6  
Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    25   9.8  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    25   9.8  

>Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical
           protein F10D11.5 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 2   HEVAVSDARSLNRSTNDSAGIECAVVSNFSYTRIIPST 115
           HE+    ARS+N + N    I+C  ++N    RI+P T
Sbjct: 167 HEIQSKPARSVNLTVNRVWNIKC--LTNIQLERILPQT 202


>U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl
           transferase protein 2 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 216 IVFIVCIINKLGNRNY 169
           I+FI+ I+N++G RNY
Sbjct: 24  IIFIIFIVNRMGPRNY 39


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 132 RRIYMVVDGIILVYEKFETTAHSIP-ALSLVDRF 34
           R+ Y  + G+ +++EKF + +H I   + L+D F
Sbjct: 215 RKFYDGLPGVNVIFEKFMSKSHKIELCMKLLDEF 248


>Z54342-7|CAA91149.1|  460|Caenorhabditis elegans Hypothetical
           protein C08H9.12 protein.
          Length = 460

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 144 KYKSRRIYMVVDGIILVYEKFETT--AHSIPALSLVDRFNERASETATSC 1
           ++KS  +  +++ +I   +   TT   ++ P   LV + NE+ S  A SC
Sbjct: 61  RHKSETVSNLINMLIPSSQTSRTTMKTNNSPTTKLVQKSNEKVSPPAASC 110


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 93  YEKFETTAHSIPALSLVDRFNER-ASETATS 4
           Y+   T+A S+P++  + RFN+R A++T  S
Sbjct: 359 YDDSPTSAASLPSVQTLIRFNDRLATQTIVS 389


>Z72506-2|CAA96621.1|  434|Caenorhabditis elegans Hypothetical
           protein F07A5.1b protein.
          Length = 434

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 147 HKYKSRRIYMVVDGIILVYEKFET 76
           H+Y     Y+  DGI+L+Y   +T
Sbjct: 357 HRYNFVHKYLCADGILLIYFMMDT 380


>Z72506-1|CAA96618.1|  432|Caenorhabditis elegans Hypothetical
           protein F07A5.1a protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 147 HKYKSRRIYMVVDGIILVYEKFET 76
           H+Y     Y+  DGI+L+Y   +T
Sbjct: 357 HRYNFVHKYLCADGILLIYFMMDT 380


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 117 VVDGIILVYEKFETTAHSIPALSLVDRFN 31
           V D + L++   + T  SIP+L+    FN
Sbjct: 87  VCDSLFLIFATLDVTPLSIPSLAFSTSFN 115


>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 14  VSDARSLNRSTNDSAGIECAVVSNFSYTRIIPSTTI 121
           +SD  SLNRS  D    EC    N  Y+  +P+ ++
Sbjct: 129 ISDMISLNRSIKDIRHKEC---KNMMYSAKLPTVSV 161


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 14  VSDARSLNRSTNDSAGIECAVVSNFSYTRIIPSTTI 121
           +SD  SLNRS  D    EC    N  Y+  +P+ ++
Sbjct: 191 ISDMISLNRSIKDIRHKEC---KNMMYSAKLPTVSV 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,102,376
Number of Sequences: 27780
Number of extensions: 80397
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)