Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D04
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0661 - 26009838-26010950,26011302-26011802 29 1.6
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 2.8
07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786 28 2.8
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 3.7
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 3.7
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 27 4.9
04_04_0646 + 26926827-26926993,26927246-26927336 27 8.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 27 8.6
>11_06_0661 - 26009838-26010950,26011302-26011802
Length = 537
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 79 HHLSGPSICAQSAPAFTDWKRTLGIV 2
HHL GP+ + S+P WK + I+
Sbjct: 297 HHLHGPTSSSSSSPVMASWKTRMEIL 322
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 400 LPKLAHLAPSSDLRLHRSSKPEFSPI 323
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786
Length = 496
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 68 GSQHLCSERACIH*LETNA 12
GS HLC +R+CI L+T A
Sbjct: 275 GSLHLCPDRSCIEWLDTQA 293
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 146 KSIVGTGYRGERLIEPSSSWFRPKFPSG 229
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 73 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 183
DG+ +V + SGE D+S ++Q+D+ ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 316 NFKWVRTPAYSNDEAGDLMTVPSGPILVSRTGA 414
+F W P + N++AG + PS P+ S +G+
Sbjct: 282 SFAWAMIPLFENNQAGGAAS-PSSPLAPSMSGS 313
>04_04_0646 + 26926827-26926993,26927246-26927336
Length = 85
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 76 GELCLVRSKSGETLMEDRSDSDV 144
GELC+ + GE L E R D DV
Sbjct: 21 GELCMDERRRGEELEEVRFDGDV 43
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 169 IPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPSI 56
IP S R + YGPP P TS V L PS+
Sbjct: 761 IPCSSGRDDFASSYGPPPNIPCTSLRTSKVSSLVHPSL 798
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,659
Number of Sequences: 37544
Number of extensions: 292193
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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