Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D04
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    29   1.4  
U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin recepto...    28   2.5  
AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin recep...    28   2.5  

>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 185 IEPSSSWFRPKFPSG*LASMFEQSHPVK 268
           ++P+ +W+ P FP   + S+ ++ H +K
Sbjct: 579 LQPNYTWYEPNFPKAYVKSLIDRGHVMK 606


>U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin receptor
           substrate homologprotein 1 protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -1

Query: 355 HRSSKPEFSPI*SLRIG*GRFGPNASNHSLYRMRLFKHRRQLS*GKLRTEPATRWFD*SF 176
           HR+S P  +    + +      P+AS++ L      +H R  S G  R+ P +     + 
Sbjct: 657 HRTSSPNHTSTSGISLNSSNASPSASSNFLASSEYLEHARTDSFGSARSSPKSLHTQRTS 716

Query: 175 APIPSSDD 152
           +P   SD+
Sbjct: 717 SPKRRSDE 724


>AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin receptor
           substrate-likeprotein protein.
          Length = 1003

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -1

Query: 355 HRSSKPEFSPI*SLRIG*GRFGPNASNHSLYRMRLFKHRRQLS*GKLRTEPATRWFD*SF 176
           HR+S P  +    + +      P+AS++ L      +H R  S G  R+ P +     + 
Sbjct: 657 HRTSSPNHTSTSGISLNSSNASPSASSNFLASSEYLEHARTDSFGSARSSPKSLHTQRTS 716

Query: 175 APIPSSDD 152
           +P   SD+
Sbjct: 717 SPKRRSDE 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836,212
Number of Sequences: 27780
Number of extensions: 230840
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)