Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D03
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 279 2e-76
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 148 4e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 138 4e-34
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 114 6e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 85 5e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 85 7e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 1e-15
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.007
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.017
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.091
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.28
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 28 0.85
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 2.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 4.5
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 4.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 7.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 279 bits (683), Expect = 2e-76
Identities = 123/139 (88%), Positives = 134/139 (96%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREQMTQ 424
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NRE+MTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 425 IMFETFNSPAMYVAIHAVL 481
I+FETFN+PA YVAI AVL
Sbjct: 122 IIFETFNAPAFYVAIQAVL 140
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 148 bits (359), Expect = 4e-37
Identities = 68/138 (49%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Frame = +2
Query: 71 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 250
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 251 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREQMTQI 427
+L ++ PIE GII NW DME+IW + + + +L PEEHP+LLTE PL N+E++ +
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 428 MFETFNSPAMYVAIHAVL 481
+ET N PA+ ++ VL
Sbjct: 128 FYETLNVPALSFSLQPVL 145
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 138 bits (334), Expect = 4e-34
Identities = 65/137 (47%), Positives = 95/137 (69%), Gaps = 2/137 (1%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 250
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 251 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREQMTQIM 430
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE+M + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 431 FETFNSPAMYVAIHAVL 481
FE + +YVAI AVL
Sbjct: 124 FERYGFGGVYVAIQAVL 140
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 114 bits (275), Expect = 6e-27
Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 24/157 (15%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 211
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 212 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 370
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 371 LLTEAPLNPKANREQMTQIMFETFNSPAMYVAIHAVL 481
LLTE PLNP NRE +IMFE+FN +Y+A+ AVL
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 85.0 bits (201), Expect = 5e-18
Identities = 46/133 (34%), Positives = 72/133 (54%)
Frame = +2
Query: 68 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 247
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 248 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREQMTQI 427
G + +K I +G + NWD +W + +L+ P EHP+L+TE NP NR + +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 428 MFETFNSPAMYVA 466
MFE+ PA Y+A
Sbjct: 121 MFESLRCPATYLA 133
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 84.6 bits (200), Expect = 7e-18
Identities = 44/130 (33%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 262
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 263 -KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREQMTQIMFET 439
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 440 FNSPAMYVAI 469
+N+P++ I
Sbjct: 142 YNAPSVAYGI 151
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.0 bits (181), Expect = 1e-15
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Frame = +2
Query: 68 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 247
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 248 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREQMT 421
I + +K +GII +W+ W +L+V P E+ +++TE NP++ R+Q+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 422 QIMFETFNSPAMYVAIHAV 478
+ FE + PA Y+ AV
Sbjct: 122 EAAFEQLHVPAFYLTKQAV 140
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.7 bits (76), Expect = 0.007
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 262
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 263 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREQMTQIM 430
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 431 FETFNSPA 454
FE F A
Sbjct: 118 FEEFQFDA 125
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.5 bits (73), Expect = 0.017
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 269 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREQMTQIMFE 436
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 437 TFNSPAMYVAIHAVL 481
P +A ++
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.091
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 128 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 271
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.28
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 329 FYNELRVAPEEHPVLLTE--APLNPKANREQMTQIMFETFNSP 451
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.85
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 15 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV----TTRLAPSSRPSWVALAT 182
RVN+ P K PKC + LT++ + P++P+ T +L S P +
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPIIRSDTIQLVISCPPVTYSDEI 68
Query: 183 RVSWSAWD 206
+V W A D
Sbjct: 69 QVPWKAID 76
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 391 QGSLGQQYGVLLGGDAQLVVEGVVPDL--LHVIP 296
+ S Q G+L+ GDA +GVV + LH +P
Sbjct: 390 EASHEQSMGILIHGDAAFAAQGVVYETFGLHALP 423
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 466 GDVHSRGVESFKHDLGHLF 410
G HS+GV F+ DLG F
Sbjct: 645 GQFHSQGVLGFRRDLGKAF 663
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 469 DGDVHSRGVESFKHDLGHLFPVRLRVQGSLGQQYG 365
D ++H+ +FKH+ G L LR G +YG
Sbjct: 1120 DSNIHNALTRAFKHENGDLHISDLRNTGLFPLRYG 1154
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 188 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 274
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 7.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 95 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 247
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 371 LLTEAPLNPKANREQMTQIMFETFN 445
+L APL+ + ++M +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 232 LITDVRVLLSHADHDTLVARATHDGREDGARRVVTG 125
++TD R+LL + H T DG DGA V+TG
Sbjct: 85 IVTDARLLLCNMTHRGATGADTRDG--DGA-GVMTG 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,279
Number of Sequences: 5004
Number of extensions: 40231
Number of successful extensions: 127
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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