Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D02
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   155   5e-39
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   155   5e-39
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    28   0.67 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   2.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   3.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   6.3  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   6.3  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  155 bits (375), Expect = 5e-39
 Identities = 78/117 (66%), Positives = 93/117 (79%)
 Frame = +2

Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 322
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 323 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSSRIGRAGT 493
           MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDS+RIG AGT
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGT 132


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  155 bits (375), Expect = 5e-39
 Identities = 78/117 (66%), Positives = 93/117 (79%)
 Frame = +2

Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 322
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 323 MMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSSRIGRAGT 493
           MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+   GPREDS+RIG AGT
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGT 132


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +2

Query: 299 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 457
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 202 LQRHVRYLNVITTPSPKKFDFGNISRLW 119
           LQ+H++YL  +  P P  F   + SR W
Sbjct: 31  LQKHLKYLTKMLDPLPSPFTVLDASRAW 58


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 128 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 265
           ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 9   ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 101 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 241
           V+NM + +P  I   KL  + +  + ++    L ++  ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 386  EIIHLLTGENPLQVLVTAIINSGPREDSSR 475
            EI  +LTGENP ++   AI+    R  ++R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 257 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 397
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 238 IFCILLFYRNIILQRHVRYLN 176
           I C+L+  RNI L+  + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 72  KKSPTRAAWLWTTCHYHSRLIF 137
           K +P R   LW +CH++  +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,751
Number of Sequences: 5004
Number of extensions: 44408
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)