Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D02
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 193 6e-50
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 188 3e-48
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 1.2
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 28 3.6
03_01_0548 + 4099386-4099847,4100435-4101316 28 3.6
03_01_0547 + 4093196-4093657,4094267-4095148 28 3.6
03_01_0544 + 4082528-4082989,4083585-4084466 28 3.6
03_01_0543 + 4076981-4077442,4078145-4079026 28 3.6
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 6.3
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 6.3
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 193 bits (471), Expect = 6e-50
Identities = 91/118 (77%), Positives = 104/118 (88%), Gaps = 1/118 (0%)
Frame = +2
Query: 140 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 316
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 317 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSSRIGRAG 490
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED++RIG AG
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAG 127
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 188 bits (457), Expect = 3e-48
Identities = 88/117 (75%), Positives = 102/117 (87%), Gaps = 1/117 (0%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 319
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 320 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSSRIGRAG 490
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED++RIG AG
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAG 128
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 71 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 244
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 8 GEVIIRKLRIKV*NMAEENWTEEVADAGGMVVDNMP-LPQPADIPEIKLFGRWSCYDVQV 184
GEV I K NM E E+ M N+P L P + +++FG S VQ
Sbjct: 1106 GEVFINLSPTKCWNMVRERLNMEIRRQLNMGKSNLPTLQPPGSVDGLEMFGLLSPPIVQA 1165
Query: 185 SDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCP 295
+D+I +Y + PH + R +Q P
Sbjct: 1166 IWARDRDHICT--EYWRSRPHVLIEDPNNRHMLSQGP 1200
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 299 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 409
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 175 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 303
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,174
Number of Sequences: 37544
Number of extensions: 282619
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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