Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D02
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 206 7e-54
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 29 2.4
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 29 2.4
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 3.2
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 3.2
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 7.5
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 206 bits (503), Expect = 7e-54
Identities = 102/145 (70%), Positives = 114/145 (78%)
Frame = +2
Query: 59 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 238
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 239 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 418
LPHSAGR+ +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114
Query: 419 LQVLVTAIINSGPREDSSRIGRAGT 493
+QVLV A+INSGPREDS+RIGRAGT
Sbjct: 115 VQVLVNAVINSGPREDSTRIGRAGT 139
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 144 SNFLGDGVVMTFKYRTCLCRIIF 212
SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 274 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 98
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 97 HAARVGDFFGPVLL 56
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 274 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 98
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 241 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 300
Query: 97 HAARVGDFFGPVLL 56
VGD F P+LL
Sbjct: 301 VQEAVGDVFNPLLL 314
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 274 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 98
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 97 HAARVGDFFGPVLL 56
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 60 RTGPKKSPTRAAWLWTTCHYHS 125
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 60 RTGPKKSPTRAAWLWTTCHYHS 125
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 283 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 161
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 283 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 161
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 79 DFFGPVLLSHISHFYSQFTNYNLAL 5
DF P L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 136 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 38
+ S W WH+ H DFFG S S F
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,750,260
Number of Sequences: 27780
Number of extensions: 248475
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -