Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D01
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   3.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.8  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   4.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   4.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    24   8.3  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    24   8.3  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.3  

>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 190 LSFSESCKYTQYIRNDGKCDIDCVKSFMSALNTICGPD---LFITTLEYITAQ 339
           LSFS SC Y++ + +DG  +++    +   L  +C  +   L IT  E I  Q
Sbjct: 73  LSFSSSCSYSENL-HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ 124


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 88   FLPSFDMVLQFMYLKENTRFQLSLVSMC 171
            F+P F   L    + EN++FQ SL S+C
Sbjct: 2300 FIPVFYQ-LAARLMNENSKFQQSLTSIC 2326


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 40  LAVLDVSHQKSNAFGFFL 93
           +++  V+H+K +A+GFF+
Sbjct: 483 ISIFPVTHEKPSAYGFFV 500


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 190 LSFSESCKYTQYIRNDGKCDIDCVKSFMSALNTICGPDLFITTLEYITAQS 342
           L   +S  Y   +      DID ++ + S  N +C  D    T++Y++  S
Sbjct: 145 LGLDDSLNYPYVLGPTCDSDIDLIREYFSFENGVCSFDNM--TVKYVSTSS 193


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 332 VIYSSVVINKSGPQIVLSADINDLTQSISH 243
           VIYS  V N S  ++    D NDL +  +H
Sbjct: 165 VIYSPTVYNGSFKRLFYLPDNNDLLKEFAH 194


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 131 FKYINCKTMSKLGKKNPNAFDF*CETSN 48
           F++++ K ++K+GK   N F    E  N
Sbjct: 58  FRFLSSKVLAKIGKVKENGFYMPFEEKN 85


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -3

Query: 350 NRLLCAVIYSSVVINKSGPQIVLSADINDLTQSISHLPSFLIY*VY-LQDSEND 192
           N +L   I +++V+ K   +   +ADINDLT+ +  + S L   ++ LQ+  N+
Sbjct: 560 NIVLPNYIRAALVVAKEYLREKANADINDLTKDMLEIYSDLKQMIHVLQEYHNE 613


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 203 SENDNPTEVLEHIDTKLS*NLVFSFKYINCKTMSKLGKKNPNAFDF 66
           S+N +P E  +    K   +L +S+KY      SK  +K P+A  +
Sbjct: 57  SKNAHPWEDTKSSSGKSDESLDYSYKYYPRGDRSKEPRKAPSAIQY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,350
Number of Sequences: 5004
Number of extensions: 27610
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)