Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D01
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0937 + 12558674-12558703,12559505-12559621,12560095-125602...    29   0.85 
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    27   6.0  

>03_02_0937 +
           12558674-12558703,12559505-12559621,12560095-12560265,
           12560499-12560614,12561196-12561253
          Length = 163

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 9   KNLSDKTIVLTRRIRCFTSKIKCIRILFT*F*HGFTIYVFEGK 137
           K L  K + L + I C    ++  R+      HGF + VF GK
Sbjct: 25  KELKQKVVRLNQEIACAQDALRQNRVTVETLRHGFLVNVFSGK 67


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 223 YIRNDGKCDIDCVKSFMSALNTICGPDLF 309
           YI +D +C   C +  +     IC PD F
Sbjct: 159 YILSDFRCSPSCTRGVILGSEPICPPDCF 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,302
Number of Sequences: 37544
Number of extensions: 144070
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)