Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D01
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical ...    29   0.75 
U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    27   4.0  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    27   4.0  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   7.0  

>AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical
           protein C46F9.2 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 64  QKSNAFGFFLPSFDMVLQFMYLKENTRFQLSLVSMCSRTSVGLSFS 201
           ++S  FG FL  F  + +F      T +QL +VS   R SV  SFS
Sbjct: 319 KQSGFFGLFLHCFKQLDEFRKWSIETEYQLKVVSSNGR-SVSFSFS 363


>U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical
           protein F11D5.3b protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 YLKENTRFQLS-LVSMCSRTSVGLSFSESCKY 216
           Y+ +N   Q S  +S+C++ + GL++ ESC +
Sbjct: 580 YILKNPTIQTSQCISICTQLAAGLAYLESCNF 611


>U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical
           protein F11D5.3a protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 YLKENTRFQLS-LVSMCSRTSVGLSFSESCKY 216
           Y+ +N   Q S  +S+C++ + GL++ ESC +
Sbjct: 610 YILKNPTIQTSQCISICTQLAAGLAYLESCNF 641


>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 360 YLKKPITLCSDIFKRGNK-QVRSTNCIKRRHK*FDAVYITLTVISDILSIF 211
           Y+ +P  +     K G++ +VR  +C  RR +  + V I+ TVI    SIF
Sbjct: 67  YVSEPSCMTVGDGKTGHRFEVRHDSCGVRRQREINGVVISATVIISFHSIF 117


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 85  FFLPSFDMVLQFMYLKENTRFQLSLVSMCSRTSV 186
           FF P+   +   + L  NT  Q SL+  CS+TSV
Sbjct: 248 FFWPTIHALDGAITLYFNTEIQRSLLKYCSKTSV 281


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 360 YLKKPITLCSDIFKRGNKQVRSTNCIKRRHK*FDAVYITLTVISD 226
           ++KKPI+L     KR N+ +R    I      F+  Y+ + +  D
Sbjct: 210 FIKKPISLSLTTIKRENEMIRQACFIATEISIFEVGYLFMRLYPD 254


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 202  ESCKYTQYIRNDGKCDIDCVKSFMSAL---NTICGPD 303
            E C+ T  +RN   CD+   K F   L     ICGP+
Sbjct: 1563 EQCRKTDEVRNLASCDVH-QKMFQKLLEENREICGPN 1598


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 202  ESCKYTQYIRNDGKCDIDCVKSFMSAL---NTICGPD 303
            E C+ T  +RN   CD+   K F   L     ICGP+
Sbjct: 1563 EQCRKTDEVRNLASCDVH-QKMFQKLLEENREICGPN 1598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,649
Number of Sequences: 27780
Number of extensions: 152198
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)