Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C24
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 155 5e-39
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 134 6e-33
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 85 6e-18
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.10
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 27 2.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 3.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 6.8
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 6.8
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.0
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 25 9.0
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 155 bits (375), Expect = 5e-39
Identities = 69/171 (40%), Positives = 105/171 (61%)
Frame = +3
Query: 9 VDLDVHHGNGVQDEYSLSKSVYTLSFHKYEPGFYPGTGGIDEIGSADGKGYSCNFPLNEG 188
+D+DVHHG+GV++ + + V T SFHK+ ++PGTG I + G GK Y+ N PL +G
Sbjct: 170 IDIDVHHGDGVEEFFYTTDRVMTCSFHKFGE-YFPGTGHIKDTGIGTGKNYAVNVPLRDG 228
Query: 189 YTNETIVYAFKKVFNAVYHYFKPDAIIVQCGADGLSHDPNGGANLTASGYSSCLKVILDK 368
+E+ FK V + + +F+P+A+I+QCG D L+ D G NL+ G+S C+ +
Sbjct: 229 IDDESYESVFKPVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSF 288
Query: 369 QKPTMLLGGGGYNHANTARLWTTLTAFVADVDLDDNIPEHNNWPQYGPSYK 521
P + +GGGGY N AR+WT T +A +LD+N+P ++ YGP YK
Sbjct: 289 NLPMICVGGGGYTVRNVARVWTYETGLLAGEELDENLPYNDYLQYYGPDYK 339
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 134 bits (325), Expect = 6e-33
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 1/171 (0%)
Frame = +3
Query: 9 VDLDVHHGNGVQDEYSLSKSVYTLSFHKYEPGFYPGTGGIDEIGSADGKGYSCNFPLNEG 188
+D+D+HHG+GVQ + S V T+SFHKY F+P TG DE G GK ++ N PL +G
Sbjct: 190 IDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGNFDENGVKGGKYFALNVPLEDG 249
Query: 189 YTNETIVYAFKKVFNAVYHYFKPDAIIVQCGADGLSHDPNGGANLTASGYSSCLKVILDK 368
+E FK + + F+P AI++QCGAD L +D G NL+ + C++
Sbjct: 250 IGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVRFTRSF 309
Query: 369 QKPTMLLGGGGYNHANTARLWTTLTAFVADVDLDDNIPEHNNWPQ-YGPSY 518
P +++GGGGY N AR W T+ + + +P + + + P Y
Sbjct: 310 NIPMLVVGGGGYTLRNVARAWCYETSICVNEQIPSELPRETLYYEFFAPDY 360
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 85.0 bits (201), Expect = 6e-18
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 9 VDLDVHHGNGVQDEYSLSKSVYTLSFHKYEPG-FYPGT--GGIDEIGSADGKGYSCNFPL 179
VD D+HHGNG Q + +V +S H+YE G FYPGT G + G G G + N P
Sbjct: 231 VDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPW 290
Query: 180 N-EGYTNETIVYAFKKVFNAVYHYFKPDAIIVQCGADGLSHDPNGGANLTASGYSSCLKV 356
+ G + +YAF++V V + F PD +IV CG D + D G LT + Y+ ++
Sbjct: 291 SCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQM 350
Query: 357 ILDKQKPTMLLG-GGGYN 407
++ + + GGYN
Sbjct: 351 LMGLADGKVFISLEGGYN 368
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 31.1 bits (67), Expect = 0.10
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 306 NGGANLTASGYSSCLKVILDKQKPTMLLGGGGYNHANTARLWTTLTAFVADVDL 467
N LT +SS ++++L + +L+G + L TTL A + +VD+
Sbjct: 920 NNSGTLTPELFSSVVRIVLKNVREFVLIGNSSIQKSKHEFLITTLQALLREVDI 973
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 33 NGVQDEYSLSKSVYTLSFH---KYEPGFYPGTGGI 128
NGV+ Y + S+Y+ SF PG + GTG +
Sbjct: 189 NGVEKLYCIGSSIYSKSFFVLIPVIPGIFRGTGDL 223
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 141 YLFHQFHQCLGRILVHICGKIMYTLIYLNCIHLEHHCH 28
+L HQF+Q + L CG+ + + CI + CH
Sbjct: 408 FLQHQFYQIMRCAL---CGEFLKNAAGMQCIDCHYTCH 442
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 326 CQICSSIRIM**TICSTLYYNSIWFKIMINSIEHLFK 216
C S IR+ T+C+ +Y ++ F I I I+ K
Sbjct: 1021 CNNASLIRVSMDTVCALIYQLNVDFAIFIPMIDKCLK 1057
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 334 PLAVKFAPPLGSCDKPSAPHCTIIASG 254
P ++ A + +CDKP PH + SG
Sbjct: 515 PEYMRLAKRIATCDKPEDPHQFKLQSG 541
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 505 YCGQLLCSGI-LSSKSTSATNAVRVVHKRAVFAWLYPPP 392
YC ++ + + SK + + A + RAVF +YP P
Sbjct: 657 YCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDP 695
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 391 PSNIVGFCLSNMTFRQLL*PLAVKFA 314
P +I +C S RQL LAV++A
Sbjct: 166 PQHIAAYCASKAAVRQLCKALAVEWA 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,835
Number of Sequences: 5004
Number of extensions: 52105
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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