Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C23
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 151 6e-38
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 151 6e-38
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.8
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 2.4
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 27 2.4
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 5.5
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.5
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 151 bits (366), Expect = 6e-38
Identities = 72/135 (53%), Positives = 89/135 (65%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 247
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILI 472
V QD++YK+FEVIL+
Sbjct: 121 VNQDATYKFFEVILV 135
Score = 50.8 bits (116), Expect = 1e-07
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 474 DPSHKAIRRDPKITWIVNAVHKH 542
DPSHKAIRRDP+I WIVN VHKH
Sbjct: 136 DPSHKAIRRDPRINWIVNPVHKH 158
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 151 bits (366), Expect = 6e-38
Identities = 72/135 (53%), Positives = 89/135 (65%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 247
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILI 472
V QD++YK+FEVIL+
Sbjct: 121 VNQDATYKFFEVILV 135
Score = 50.8 bits (116), Expect = 1e-07
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 474 DPSHKAIRRDPKITWIVNAVHKH 542
DPSHKAIRRDP+I WIVN VHKH
Sbjct: 136 DPSHKAIRRDPRINWIVNPVHKH 158
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 154 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 68
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = -1
Query: 121 NIAQLFPIQLLYISVRAHLDESVIDPSVYDEREKEL 14
++ LF L +S+R +L+++++ P VY+ + ++
Sbjct: 331 HLPPLFNFNLAELSIRPNLNKAILPPHVYESLDVDI 366
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -1
Query: 178 VHTSQLAILPHSYTQEKSHNIAQLFPIQLLYISVRAHLDESVIDPSVYDEREK 20
+H S+ A+LP + ++ L + +HLD SV ++YD+ E+
Sbjct: 46 LHVSESALLPGQVNTYFENRYSKTVSSSLTAANTWSHLDASVGTNTMYDDLEQ 98
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 172 TSQLAILPHSYTQEKSHNIAQLFPIQLL 89
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 351 LATCSLLLRSVLVAGVVVYACLIHTG 428
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 134 LRIRVWQYRQLTRMHRAPRPTRPD 205
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 213 EGLDTVPSKVMLSSESACAVVAVNAQCP 296
E L+ +P KV++ CAV V P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,149
Number of Sequences: 5004
Number of extensions: 41072
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -