Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C23
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   170   5e-43
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   3.8  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   3.8  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  170 bits (414), Expect = 5e-43
 Identities = 75/138 (54%), Positives = 99/138 (71%)
 Frame = +2

Query: 68  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 247
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
           ++R+               TYGKPK+HGVN+LK  ++ Q++AE             NSYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 428 VAQDSSYKYFEVILI*SF 481
           VA+DS+YK++EV+LI  F
Sbjct: 121 VAEDSTYKFYEVVLIDPF 138



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 474 DPSHKAIRRDPKITWIVNAVHKH 542
           DP HKAIRR+P   WI   VHKH
Sbjct: 136 DPFHKAIRRNPDTQWITKPVHKH 158


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 195  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 365
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 195  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 365
            R  T+  G    P     SS S   ++A    Q P    TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 328 WCQPTETHSQPAVYC*GACWSP 393
           WC P  T+ + A+YC  A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 190
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 190
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,796
Number of Sequences: 27780
Number of extensions: 235750
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)