Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C20
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    37   0.002
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    28   0.76 
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   4.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   5.4  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   5.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   5.4  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    24   9.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   9.4  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 316 ERFIELQDLLHGFRDPHVMDVKMGTRTF 399
           ER+I ++DL  G + P V+DVKMGTR +
Sbjct: 713 ERYIVIEDLTSGMKRPCVLDVKMGTRQY 740


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 262 DKRLELHTHHVPDYELDDPPERDVSIRFQDQRVPESQDDQLAGTTPTIG 116
           DK  E +T    + EL DP ++DV     D +  +  D+ L    PT+G
Sbjct: 306 DKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDIMDEFLVSYGPTLG 354


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 325 IELQDLLHGFRDPHVMDVKMGTRTFLEDEVSNAHARSD 438
           I L+++L+    P VMD+K+G + + +D       R D
Sbjct: 83  IILENILYQMETPCVMDIKLGKQLWADDAPLEKRKRLD 120


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 HNPERDAYEALAACPHMRAVIPRYYREL 303
           +NP+  AYEA+  C  M     ++Y+EL
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 214 DDPPERDVSIRFQDQRVPESQDDQLAGTTPTIGISTRHP 98
           D PPERDVS++    ++  S        T    +  R P
Sbjct: 95  DQPPERDVSLKESSNKINPSNFFDSEQITKINAVKKRFP 133


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 403 QGMSVCPS*HPLHVGHGSHE 344
           +GM  CPS   LHV +  HE
Sbjct: 357 RGMRYCPSNFVLHVRYAEHE 376


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 83  SQHLHRMPC*NPDRRSGSS*LVILALWHPLVLE 181
           S +LH   C NP+  S  S  ++ AL HP   E
Sbjct: 538 SDNLHGESCNNPNANSVHSAQLLQALLHPSATE 570


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 352 FRDPHVMDVKMGTRTFLEDEVSNAHARSDLY 444
           F +  + ++     TF+ DE SN H R D Y
Sbjct: 419 FNESDLKNMASRIETFINDEASNNH-REDFY 448


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 259 CPHMRAV--IPRYYRELEYGGERFIELQDLLHGFRDPH--VMDVKMGTRTFLEDEVSNAH 426
           C + RA+  + R  R L    E+F +LQD L  F++    + +++    + L +  S AH
Sbjct: 140 CTYHRAIGFVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,943
Number of Sequences: 5004
Number of extensions: 36129
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)