Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C17
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   2.7  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   3.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   4.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   4.7  
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    25   6.1  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    24   8.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 155  PISTPSTVESVPLPTGSLQLPVS 223
            PI  PST   VP+PT +  +P S
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKS 1055


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 191 LPTGSLQLPVSDXXXXXXXXXXXXXXASDEITANRLPTE 307
           LPT S+  P+S+               S  +T++ +PTE
Sbjct: 724 LPTSSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTE 762


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HEGDVDFAGSASVRDRPGSTRCVRPVQSTSRL 97
           H G   F G  + RD  G  R  RP+++  R+
Sbjct: 77  HYGFECFEGMKAFRDEKGVPRLFRPIKNAERM 108


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 137 GVLLPAPISTPSTVESVPLPTGSLQLPVS 223
           GV+     +TP +  + P+PTG+  LP S
Sbjct: 57  GVVGERKSNTPKSFAAPPVPTGAPSLPTS 85


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 289 SCDLITSLFPFIAAP 245
           +C LIT LFP I++P
Sbjct: 343 NCPLITQLFPLISSP 357


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 269 ASDEITANRLPTECNEPNFPNVQS 340
           A  E T  RL TECN   F  VQS
Sbjct: 58  ALPERTVERLKTECNAALFGAVQS 81


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 ITANRLPTECNEPNFPNVQSIDTRINKNVLD 373
           +TA+ + T  N P+  NV+S +  +N +  D
Sbjct: 357 VTADNMNTWDNTPSVENVESANENVNNHNAD 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,104
Number of Sequences: 5004
Number of extensions: 23339
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)