Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C17
(413 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70874-1|AAB09592.1| 666|Drosophila melanogaster hepatocyte nuc... 31 0.46
BT003533-1|AAO39537.1| 704|Drosophila melanogaster RE09535p pro... 31 0.46
BT001800-1|AAN71555.1| 738|Drosophila melanogaster RH29074p pro... 31 0.46
AE014134-1555|AAF52703.1| 666|Drosophila melanogaster CG9310-PC... 31 0.46
AE014134-1554|AAN10680.1| 732|Drosophila melanogaster CG9310-PB... 31 0.46
AE014134-1553|AAF52702.2| 704|Drosophila melanogaster CG9310-PA... 31 0.46
AE014297-286|AAF52001.1| 2296|Drosophila melanogaster CG2926-PA ... 31 0.80
AE014297-3882|AAF56535.1| 296|Drosophila melanogaster CG14546-P... 28 5.6
U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor ... 27 7.4
M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha rec... 27 7.4
M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha rec... 27 7.4
M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha rec... 27 7.4
AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-P... 27 7.4
AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-P... 27 7.4
AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-P... 27 7.4
>U70874-1|AAB09592.1| 666|Drosophila melanogaster hepatocyte
nuclear factor 4 homologprotein.
Length = 666
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 555 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 587
>BT003533-1|AAO39537.1| 704|Drosophila melanogaster RE09535p
protein.
Length = 704
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 593 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 625
>BT001800-1|AAN71555.1| 738|Drosophila melanogaster RH29074p
protein.
Length = 738
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 627 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 659
>AE014134-1555|AAF52703.1| 666|Drosophila melanogaster CG9310-PC,
isoform C protein.
Length = 666
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 555 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 587
>AE014134-1554|AAN10680.1| 732|Drosophila melanogaster CG9310-PB,
isoform B protein.
Length = 732
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 621 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 653
>AE014134-1553|AAF52702.2| 704|Drosophila melanogaster CG9310-PA,
isoform A protein.
Length = 704
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 104 QSSALMLIVPVAHISSSRAGPSPTHFQQNQHHP 6
Q + L +PV H + SR+GP PT + HP
Sbjct: 593 QQESSYLDMPVKHYNGSRSGPLPTQHSPQRMHP 625
>AE014297-286|AAF52001.1| 2296|Drosophila melanogaster CG2926-PA
protein.
Length = 2296
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 180 STVLGVDIGAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKST 13
S+ L + +G GSST GG GGGD+ D G+T V LT + S+
Sbjct: 1977 SSSLSLSLGVGSSTGGGGGGAGGGDNH---DKTADGKTITVLSNVLLTSSSVVSSS 2029
>AE014297-3882|AAF56535.1| 296|Drosophila melanogaster CG14546-PA
protein.
Length = 296
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 59 SSRAGPSPTHFQQNQH 12
S R P+PT F QNQH
Sbjct: 229 SGRTSPNPTRFNQNQH 244
>U02042-1|AAA19249.1| 606|Drosophila melanogaster GABA receptor
protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 520 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 564
>M69057-3|AAA28558.1| 595|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 595
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 509 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 553
>M69057-2|AAA28557.1| 601|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 601
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 515 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 559
>M69057-1|AAA28556.1| 606|Drosophila melanogaster GABA-alpha
receptor protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 520 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 564
>AE014296-1598|AAN11989.1| 585|Drosophila melanogaster CG10537-PB,
isoform B protein.
Length = 585
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 499 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 543
>AE014296-1597|AAF50311.1| 606|Drosophila melanogaster CG10537-PA,
isoform A protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 520 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 564
>AE014296-1596|AAN11988.1| 606|Drosophila melanogaster CG10537-PC,
isoform C protein.
Length = 606
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 156 GAGSSTPDGGLNEGGGDSELSLDVDCTGRTHLVEPGRSLTDALPAKSTSPS 4
G G GG EGGGD E ++ HL+ PG+ D +PS
Sbjct: 520 GGGGGGGGGGPPEGGGDPEAAVPA------HLLHPGKVKKDINKLLGITPS 564
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,775
Number of Sequences: 53049
Number of extensions: 335040
Number of successful extensions: 1757
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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