Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C17
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.19 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 210 CNDPVGNGTDSTVLGVDIGAGSSTPDGGLNEGGGDSELSL 91
           C D +G    S+  GV  GA   +   G N GGG   L +
Sbjct: 15  CCDNLGGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGI 54


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 149 PAPISTPSTVESVPLPTGSLQ 211
           P P    +T+ SVP P  SL+
Sbjct: 44  PLPFGVENTISSVPQPPRSLE 64


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 38  VRDRPGSTRCVRPVQSTSRLXXXXXXXXXXXXXGVLLPAPISTPST 175
           VR++  S++ ++P Q    +             GV+ P  I TPST
Sbjct: 810 VREKLSSSQPMQPPQQNPYMFLPVSYMSTTMA-GVIYPPVIGTPST 854



 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 35  THFQQNQHH 9
           THFQ NQ H
Sbjct: 689 THFQVNQSH 697


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 56  SRAGPSPTHFQQNQHHP 6
           S AG  P  +  +QHHP
Sbjct: 307 STAGFLPPSYHPHQHHP 323


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 LILVSIDCTLGKFGSLHSVGNLL 289
           +++ +  CT G  G  H+VG ++
Sbjct: 138 VVITAAICTSGIVGRTHTVGYII 160


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 51  PARRDVCDRYNQHQG 95
           P + DVC+R  +H G
Sbjct: 147 PYKCDVCERAFEHSG 161


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 349 SVNRLYIRKVWFITLSRQSVSCDL 278
           S NRL    VW +TL+ + V   L
Sbjct: 898 SGNRLVTFPVWQVTLNARLVELSL 921


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 353 INKNVLDSCG*ERYA 397
           I  ++LD+CG + YA
Sbjct: 17  IGVHILDTCGRDTYA 31


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 353 INKNVLDSCG*ERYA 397
           I  ++LD+CG + YA
Sbjct: 107 IGVHILDTCGRDTYA 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,612
Number of Sequences: 438
Number of extensions: 1662
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)