Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C15
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   125   1e-30
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.23 
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   2.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   3.8  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   3.8  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    24   6.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.7  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    23   8.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   8.7  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  125 bits (302), Expect = 1e-30
 Identities = 57/83 (68%), Positives = 67/83 (80%)
 Frame = +3

Query: 51  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 230
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 231 AQVRFVTGKKILRIMKAMGLAPD 299
            QVRF+TG+KI+RI+KA GLAP+
Sbjct: 61  PQVRFITGQKIMRILKANGLAPE 83


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -1

Query: 175 LPSLKICSLTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYYIADLTTTTLV 2
           L S  +C+ T+S+  F Q+ +   YGS  +     G+    I    Y++ D+ ++++V
Sbjct: 275 LRSFALCNATTSSSLFRQIASYGVYGSFHFSSSESGSFANLIGTNNYFMTDVKSSSVV 332


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   HEGCRCQIGDIIKSRQYGSY 61
           +EGC+C +G + +S Q G +
Sbjct: 365 NEGCKCVVGGLPRSEQKGYF 384


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 PGRDTAAVRQRRLGYTLARCVHTTHI 48
           P R T A R+R L YT ++  H+T +
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSL 578


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = -3

Query: 299 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLDIIS 138
           ++++     D+    ++ K+ L   +   +  TDLG    L   F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 152 GTDLQTWQKGSYSFPNRCHAQGLSWCCTSQICYW*K 259
           GT     ++G     + C+A G+++  T Q+ YW K
Sbjct: 379 GTGTFCVRRGPEGNKSLCNACGVAYAKTGQLPYWRK 414


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 93  PTGIYPCQVRAYDPYWRLFI 34
           PT IYP  VRA D   + +I
Sbjct: 395 PTSIYPSNVRARDDSQQAYI 414


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 160 ICSLTSSAVSFNQV 119
           ICS+ SS++SF QV
Sbjct: 371 ICSMHSSSISFRQV 384


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 80  YIPVGAAVPPQCPYL 124
           YIPVG  VP   PY+
Sbjct: 597 YIPVGYPVPGYTPYM 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,938
Number of Sequences: 5004
Number of extensions: 29253
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)