Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C15
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 116 4e-27
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 106 4e-24
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 88 1e-18
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 55 1e-08
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 31 0.27
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 29 1.1
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 2.5
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 3.3
09_06_0133 - 21053851-21053863,21053920-21054017,21054198-210543... 26 5.7
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 26 5.7
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 26 5.7
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 26 5.7
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 26 7.6
08_01_0766 - 7401775-7402107,7402734-7402880,7403008-7403034 26 7.6
02_03_0215 + 16505994-16506542,16506803-16507894 26 7.6
02_01_0428 - 3127098-3129254 26 7.6
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 116 bits (279), Expect = 4e-27
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +3
Query: 51 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 230
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 231 AQVRFVTGKKILRIMKAMGLAPD 299
V+ VTG KILRI+KA GLAP+
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPE 83
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 106 bits (254), Expect = 4e-24
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3
Query: 51 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 230
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 231 AQVRFVTGKKILRIMKAMGLAPD 299
+ VTG KILR++K+ GLAP+
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPE 83
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 88.2 bits (209), Expect = 1e-18
Identities = 49/92 (53%), Positives = 58/92 (63%), Gaps = 17/92 (18%)
Frame = +3
Query: 75 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIFKLGKKGLTPSQIG 203
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 204 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 299
V+LRD HG+ V+ VTG KILRI+KA GLAP+
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPE 122
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 144 DVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 296
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAP 139
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 128 QPGRDTAAVRQRRLGYTLARCVHTTHI 48
+P TAA RQ+ + YT C HT+H+
Sbjct: 88 KPEESTAAGRQKPVLYTFINCCHTSHL 114
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 302 VIRSKTHSF-HDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLDII 141
V+R H H FT + +RV +++ D+G AKF+ L LD++
Sbjct: 137 VLRQAKHPMRHAVHHFFTFLFDYKYSVIRVLQNENDVGHVFRALAKFKSLLLDVV 191
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 105 RRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD 218
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 184 RPFLPSLKICSLTSSAVSFNQVGTLRRYGSADW 86
R FL L L + V TLR+YG+ DW
Sbjct: 94 RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126
>09_06_0133 -
21053851-21053863,21053920-21054017,21054198-21054356,
21054608-21054710,21056053-21056342
Length = 220
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 145 MSRNRSSNLAKRVLLLPKSVSCSGTLMVLH 234
M+R R+ L + +LL + SCS L+VLH
Sbjct: 1 MARPRAPLLRRMLLLCAVAASCSYYLLVLH 30
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 26.2 bits (55), Expect = 5.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 90 SALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 266
S +PY T L D++K+Q+ + KG+T + V++ + QV KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274
Query: 267 RIMKAMGL 290
K GL
Sbjct: 275 EFCKNEGL 282
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 160 SSNLAKRVLLLPKSVSCSGTLMVLHKSDLLLVKRSCVS 273
SSN + V + K V CS L +SD+ L+K++C S
Sbjct: 72 SSNNSDFVHVEGKGVRCSPRLNKFKQSDIGLLKKTCSS 109
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 72 GKGISQSALPYRRSVPT 122
GKG+ ++LP+ R+VPT
Sbjct: 46 GKGVPGASLPFHRAVPT 62
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 23 IGDIIKSRQYGSYARTWQGYIPVGAAV 103
+G+++KS + +A+ W IP+G V
Sbjct: 238 LGEVVKSPEKSFWAKYWMYIIPLGLIV 264
>08_01_0766 - 7401775-7402107,7402734-7402880,7403008-7403034
Length = 168
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 39 KAANMGRMHAPGKGISQSALPYRRSVPTW 125
+AA + PG G YRR PTW
Sbjct: 125 RAAESTASNKPGVGRGSEGRGYRRRAPTW 153
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 123 WLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAM 284
+ K+ + +++ G K P IG L D H + V VTGK ILR ++ +
Sbjct: 284 YCKVLLPSILQELDMYGVKA--PKGIG-QLNDLHTLGVVNVVTGKVILRELEKL 334
>02_01_0428 - 3127098-3129254
Length = 718
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 10 LSLSDRRYNKKPPIWV-VCTHLARVYPSRRCRTAAVSLPG*N*PLMMSRNRSSNLAKRVL 186
L L D R P+W+ L + S T + + P++ S +N+ RVL
Sbjct: 467 LFLYDNRLTGTVPVWINKLNFLICLDISNNSFTGEILMTLIQMPMLKSEKTVANIDARVL 526
Query: 187 LLPKSVSCSGTLMVL 231
+LP +S L L
Sbjct: 527 ILPTYMSSKKDLPAL 541
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,747
Number of Sequences: 37544
Number of extensions: 210434
Number of successful extensions: 629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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