Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C15
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 127 2e-30
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 27 4.0
AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical... 27 4.0
U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical pr... 26 7.0
U67951-4|AAB07572.1| 398|Caenorhabditis elegans Hypothetical pr... 26 7.0
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 25 9.2
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 25 9.2
U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical p... 25 9.2
AF003130-11|AAM15579.1| 250|Caenorhabditis elegans Hypothetical... 25 9.2
AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical ... 25 9.2
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 13 protein.
Length = 151
Score = 127 bits (306), Expect = 2e-30
Identities = 55/83 (66%), Positives = 72/83 (86%)
Frame = +3
Query: 51 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 230
MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 231 AQVRFVTGKKILRIMKAMGLAPD 299
QVR + G KI RI+K+ G+AP+
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPE 83
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 147 VKEQIFKLGKKGLTPSQIGVMLRDSHG 227
V+ I + KKG+ P I L+ SHG
Sbjct: 34 VRHAIISMAKKGIKPCHISRQLKVSHG 60
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 147 VKEQIFKLGKKGLTPSQIGVMLRDSHG 227
V+ I + KKG+ P I L+ SHG
Sbjct: 34 VRHAIISMAKKGIKPCHISRQLKVSHG 60
>AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical
protein Y47G6A.27 protein.
Length = 421
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 317 STNLPVIRSKTHSFHDTQDLFTSNKSD 237
ST LP+IR +H T + NKSD
Sbjct: 84 STWLPLIRQSFGEYHKTPVILVGNKSD 110
>U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical
protein K08F11.5 protein.
Length = 625
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 308 LPVIRSKTHSFHDTQDLFTSNKSD 237
LP+IR +H+T + NKSD
Sbjct: 103 LPLIRQSFGEYHETPVILVGNKSD 126
>U67951-4|AAB07572.1| 398|Caenorhabditis elegans Hypothetical
protein C47C12.4 protein.
Length = 398
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 308 LPVIRSKTHSFHDTQDLFTSNKSD 237
LP+IR +H+T + NKSD
Sbjct: 43 LPLIRQSFGEYHETPVILVGNKSD 66
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 129 KLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDHRK 308
KL + K Q K G+KG+T S + R+ + Q R K+I + +H
Sbjct: 838 KLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQERDTMSKRIAALFYENDKQAEHFN 897
Query: 309 I 311
I
Sbjct: 898 I 898
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 129 KLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDHRK 308
KL + K Q K G+KG+T S + R+ + Q R K+I + +H
Sbjct: 838 KLEEEMAKRQPLKKGEKGVTKSALIKKEREIMALEQERDTMSKRIAALFYENDKQAEHFN 897
Query: 309 I 311
I
Sbjct: 898 I 898
>U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical
protein C43E11.11 protein.
Length = 656
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 9 VVVVRSAI**KAANMGRMHAPGKGISQSALPYRRSVPTWL 128
V+ V+++I A + RMH +G+++S PY + + T++
Sbjct: 447 VIEVKNSI---RAIVARMHVETRGMTKSVAPYMQELLTYI 483
>AF003130-11|AAM15579.1| 250|Caenorhabditis elegans Hypothetical
protein F55A12.2b protein.
Length = 250
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 196 WEGVRPFLPSLKICSLTSSAVSFNQV 119
WEG +P P + +C+ VSF +
Sbjct: 163 WEGSKPARPVIAMCAAIQMIVSFGSM 188
>AF003130-9|AAP68939.1| 307|Caenorhabditis elegans Hypothetical
protein F55A12.2c protein.
Length = 307
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 196 WEGVRPFLPSLKICSLTSSAVSFNQV 119
WEG +P P + +C+ VSF +
Sbjct: 220 WEGSKPARPVIAMCAAIQMIVSFGSM 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,332,358
Number of Sequences: 27780
Number of extensions: 167780
Number of successful extensions: 448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -