Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C14
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    31   0.008
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    24   0.67 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 30.7 bits (66), Expect = 0.008
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
 Frame = +2

Query: 80   FIRGKNERARRVSAEDGWKEHGMISESAAPPHMLHYAHELARKDLDI-SQLRKEKHIMEG 256
            ++RG+   A+R  A D  + +G +  +  PPH+  Y    AR   D+ SQ   E  ++  
Sbjct: 733  YLRGREVVAQRERAADMKRRNGALIYNILPPHVAAYFLSRARHHDDLYSQSYAEVGVLFA 792

Query: 257  ---QFRDCQRDATIEKERFKEVIRTLKEEI-DRLRMIQSREGANLEYLKNVVMAYLLSS 421
                F D   + +I  +   E +R L E I D   ++   +  ++  +K +   Y+ +S
Sbjct: 793  SMPNFADFYSEESINNQGL-ECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTYMAAS 850


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 134 KEHGMISESAAPPHMLHYAH 193
           KEH M S +  P HM  Y H
Sbjct: 65  KEHKMASMNIVPYHMSPYGH 84


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 150 YRRAPLPPTCCTTRTNS 200
           Y   P+P +CC +  N+
Sbjct: 154 YNDKPIPASCCNSPENN 170


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 98  ERARRVSAEDGWKEHGMISESAAPPHMLHYAHE 196
           E  RR+ +ED      +  + + PPH   + H+
Sbjct: 786 EVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQ 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,589
Number of Sequences: 438
Number of extensions: 2800
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)