Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C13
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   200   1e-52
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   200   1e-52
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    34   0.011
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   2.9  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    25   6.8  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.8  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   9.0  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.0  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.0  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  200 bits (487), Expect = 1e-52
 Identities = 91/138 (65%), Positives = 111/138 (80%)
 Frame = +3

Query: 15  QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 194
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 195 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 374
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119

Query: 375 VTIGECRPLSKTVRFNVL 428
           VT+G+CRPLSKTVRFNVL
Sbjct: 120 VTVGQCRPLSKTVRFNVL 137


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  200 bits (487), Expect = 1e-52
 Identities = 91/138 (65%), Positives = 111/138 (80%)
 Frame = +3

Query: 15  QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 194
           Q+ER+FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DKKCPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 195 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 374
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119

Query: 375 VTIGECRPLSKTVRFNVL 428
           VT+G+CRPLSKTVRFNVL
Sbjct: 120 VTVGQCRPLSKTVRFNVL 137


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 222 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 401
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 402 SKTVRFNVL 428
           S T RF ++
Sbjct: 64  SATKRFEII 72


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 374 DVSDFHVPEARR*MNRHVPVSL 309
           DV+ + VPEARR   RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 472 NFLKDFLEPLPLET---FSTLNLTVLESGLH 389
           N LKD +EPL L T   F++L  +V +S LH
Sbjct: 323 NVLKDSIEPLLLPTVNKFASLGWSVDDSNLH 353


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
 Frame = -2

Query: 217 RIRPRMDTLPVNGHFLSMYVPSTASRGVLK--------PRPTSLWYLRGLRLRFTPMPFL 62
           +I+P ++++ +   +L+ Y PS   R ++         P+  SL +LR ++      P L
Sbjct: 364 QIKPDLESMLIISEYLNEYKPSPKMRELINWLYSNFHLPKTVSLHFLREVQSLVFRYPLL 423

Query: 61  RFK--------KTVGCFWN 29
             K        K  GC WN
Sbjct: 424 HSKIHLAISTLKDSGCDWN 442


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 161 CAFNGLARRFEA*AHIFVVPKRLTAALHADAFLAIQEDSWLLL 33
           C+F+GL    EA A   + PK  ++    D   ++QE  + +L
Sbjct: 210 CSFSGLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAML 252


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 357 VEIGDIVTIGECRPLSKTVRFNVL 428
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 359 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 270
           H PE     NR   ++++K+V+F+Q+ E++
Sbjct: 49  HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 72  IGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDK 173
           +G   S+  L   ++ GLG K   E   G YID+
Sbjct: 103 VGFDVSKPSLPVFENSGLGSKYSTEIANGVYIDE 136


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = -1

Query: 329 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 198
           +HV  + L    FR     I  DN  +LHF       H ++   QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 421 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 302
           L+ + +   L SP+ T++  +  L  G    D+FL  FSN
Sbjct: 6   LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,190
Number of Sequences: 5004
Number of extensions: 43090
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)