Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C08
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 0.46
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.1
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 1.8
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 3.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 4.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 4.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 5.6
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 5.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 5.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 5.6
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 7.4
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 24 9.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 9.8
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.46
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 182 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 361
D EK V S + E+ QK++ D E+ D S+ T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 362 LLEGVEHFDKT 394
+EGV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.1
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 95 APSLKDLPNVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 268
AP K L + N+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 13 APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 1.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 125 ANDLKSQLE---GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 292
+ND++S G L DVDT ++VL E Q+ DGI +FDA +KH
Sbjct: 182 SNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 354 CAFSAATTSLSGRGFFSWVSVCFKLVASNFSI-PSNRDF 241
C S +TS G W S CFK V N + PS+ DF
Sbjct: 27 CWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDF 65
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 240 WVFSVATSSADGRTIFSFVSTSRKQL 163
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 240 WVFSVATSSADGRTIFSFVSTSRKQL 163
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 240 WVFSVATSSADGRTIFSFVSTSRKQL 163
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 371 LPVSSDVPFPLRQHLCQAEGSSPGFLYV 288
LP S FPL + A +SPGF+ V
Sbjct: 114 LPTPSQELFPLEEEKLYAPENSPGFVEV 141
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 224 ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 325
+T QKSL D E DA LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 240 WVFSVATSSADGRTIFSFVSTSRKQL 163
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 152 GFNTSCLRDV-DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEK 310
G+N + +++V D ++KI+L + Q+ LF+ +K T+ H+E +EK
Sbjct: 77 GYNITFVQNVTDIDDKIILRAR--------QQYLFEEYKKQQGTNKSHSEAREK 122
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 197 IVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 325
+ L S ED+ + T+ S+ + + ++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = +2
Query: 215 EDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKT 394
EDV E+ + + E D ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 307 LLGFCMFQTGGIEFLN 260
L+G+CMF GI +LN
Sbjct: 618 LIGYCMFTFLGISYLN 633
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 333 TSLSGRGFFSWVSVCFKLVASNFSIPSNRDF 241
T++SG G F +S C+K V +SIP+ F
Sbjct: 405 TNVSG-GIF--MSTCYKYVLGKYSIPTESCF 432
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.8 bits (49), Expect = 9.8
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 110 DLPNVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK--TQKSLFDGIEKFDATS 283
DL V ND + + S + N I+LP E++ T + L D + + + TS
Sbjct: 144 DLTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
Query: 284 LKHT 295
+T
Sbjct: 204 SSNT 207
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 23.8 bits (49), Expect = 9.8
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 378 STPSSKF*CAFSAATTSLSGRGFFSWVSVCFKLVASNFSIPSNRDFWVFSVATSSADGRT 199
++ SS F + + ++ +S S S +++S+ S PS+ + S +TSS
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSST---- 602
Query: 198 IFSFVSTS 175
FS STS
Sbjct: 603 -FSSASTS 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,165
Number of Sequences: 5004
Number of extensions: 35236
Number of successful extensions: 120
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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