Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C08
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 0.59
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 29 1.8
03_06_0078 + 31505126-31507933 29 1.8
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 29 1.8
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 29 1.8
06_03_0355 + 19822110-19824491 28 2.4
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368... 28 3.1
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 27 4.1
06_02_0203 + 12986685-12988691 27 4.1
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337... 27 4.1
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 27 5.5
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 5.5
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 27 7.2
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245... 27 7.2
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 27 7.2
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 26 9.6
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 26 9.6
03_05_1025 + 29811918-29811977,29812044-29812595 26 9.6
02_01_0448 + 3227721-3228968 26 9.6
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 119 NVANDLKSQLEGFNTSCLRDVDTNEKIVL 205
+ DL+S+L+ NT CL + + N+K+++
Sbjct: 50 SAVKDLQSKLDAVNTECLAEKEKNKKLII 78
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 203 LPSAEDV--ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGV 376
L SAED+ A + F + K+D T + T+ E NP K ++ +AH+ L
Sbjct: 244 LESAEDIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKL---- 299
Query: 377 EHFDK 391
EH+D+
Sbjct: 300 EHYDE 304
>03_06_0078 + 31505126-31507933
Length = 935
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 245 SLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEH 382
S F G + TS K ++P+PD VV+ + A +++ + +EH
Sbjct: 536 SWFSGRKNVKKTSPKVLSKLRRSPIPDNHVVSFDAAVRSVSQELEH 581
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 107 KDLPNVANDLKSQLEGFNTSCLRDVDTNEKI 199
K+L +DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 107 KDLPNVANDLKSQLEGFNTSCLRDVDTNEKI 199
K+L +DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>06_03_0355 + 19822110-19824491
Length = 793
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 170 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET---QEKNPLPDKDVVA 340
+ +V +++LP+ E+VATE + +E DA SL T +E +P+ D
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261
Query: 341 AEKAHQNLLEGV 376
A+ +N G+
Sbjct: 262 ADGDEENDATGL 273
>02_05_0280 +
27435166-27435254,27436348-27436437,27436764-27436866,
27437318-27437377,27437745-27439148,27439227-27439328,
27439424-27439609,27439695-27439820,27439905-27440000,
27440509-27440574
Length = 773
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = -1
Query: 261 IPSNRDFWVFSVATSSADGRTIFSFVSTSRKQLVLNPSS*LLRSLATFGKSFREGAS 91
+P ++ F + S+ SSADG T ++K L + S LRSLA+F + + +S
Sbjct: 149 LPYHQQFQLSSL--SSADGLTNIKTDPENKKLLENSASVESLRSLASFSSKYSQSSS 203
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 194 KIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKN 313
K VLPS E++A ++ S GIE+ + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>06_02_0203 + 12986685-12988691
Length = 668
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 164 SCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAA 343
S L ++ T + V+ + + + T K D E T+L + + P+P+ + +AA
Sbjct: 459 SLLLEISTRAEGVVAAVDALGTTAKFKKA-DHAEPPATTTL---DAEAAMPVPNSNAIAA 514
Query: 344 EKAHQNLLEGVEHFDK 391
++AH N G EH K
Sbjct: 515 DEAHGNATAG-EHDKK 529
>03_02_0755 +
10932897-10933010,10933446-10933577,10933666-10933750,
10934668-10934831,10934911-10935357
Length = 313
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = +2
Query: 152 GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKD 331
G NT+ N + P +E + + +G+ +L P P
Sbjct: 208 GVNTAGSNSDSVNNDLPRPDSESEIVQHIVEGRTEGVSNHSRANLSRENIPRVAPTPQNP 267
Query: 332 VVAAEK-AHQNLL 367
VVA +K H LL
Sbjct: 268 VVAIQKPKHDRLL 280
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 191 EKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVA 340
E+I+ +++ KT + ++DG F TSL + + Q+ P P VA
Sbjct: 222 EEILSSNSQSADNIKTDQHVYDGGAPFPGTSLPN-KAQQPQPYPGNFCVA 270
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 182 RRLASSSC*IPPVDF*DHWPH 120
+RLA S C + P F HWPH
Sbjct: 1044 KRLAISCCVLAPDLFCGHWPH 1064
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 128 NDLKSQLEGFNTSCLRDVDTN--EKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET 301
N L+++ + L D T+ ++ + S D A + S +EK D T++ TET
Sbjct: 543 NLLENRADDNREDALEDAFTSGIDEAAITSGVDEAAMEADAST---VEKNDDTAIDGTET 599
Query: 302 QEKNPLPDKDVV 337
+EK+ + D++
Sbjct: 600 KEKHEKTNDDIL 611
>07_03_1315 -
25722757-25722876,25722972-25723328,25723924-25724500,
25724577-25725265,25725487-25725822,25726190-25726527,
25726619-25726746,25726906-25727030,25727547-25727589,
25727714-25727802,25728396-25728511,25729157-25729276,
25729752-25729794
Length = 1026
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 75 IV*SGIKIDGRLKRGRRYVHYAASC 1
I+ +G+K++ R RG +H+AASC
Sbjct: 650 IITAGVKVNFRDARGWTALHWAASC 674
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 182 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD-KDVVAAEKA-H 355
+T KI+ PS+++ + + I K K E K+P+ D ++ A H
Sbjct: 497 ETGVKIIFPSSKEETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYSHFISLPLAIH 556
Query: 356 QNLLEGVEHF 385
+L+E + HF
Sbjct: 557 PSLVEKLNHF 566
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 99 PP*RTCRMWPMISKVNWRDSTRAACETSTQMRRSSYRR 212
PP RTC WP W+ + + + +RS ++R
Sbjct: 689 PPSRTCNCWP-----KWKSKKKTTKPKTEKKKRSFFKR 721
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -1
Query: 312 FFSWVSVCFKLVASNFSIPSNR---DFWV-FSVATSSADGRTIF 193
F W S+ F + S F + ++R D W+ + V TS+A RTIF
Sbjct: 902 FAGW-SIAFLICLSVFLMQASRNGNDLWLTYWVDTSTASSRTIF 944
>03_05_1025 + 29811918-29811977,29812044-29812595
Length = 203
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 344 PLRQHLCQAEGSSPGFLYVSNWW 276
PL H+ A P F YVSNW+
Sbjct: 3 PLPMHMDHASCIWPPFTYVSNWF 25
>02_01_0448 + 3227721-3228968
Length = 415
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 395 AFCRSARRLPVSSDVPFPLRQHLCQAEGSSPGF 297
A CRS R P PL LC A+GS GF
Sbjct: 48 ATCRSWRTSAREHRAPPPLSPCLCFADGSFRGF 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,587,110
Number of Sequences: 37544
Number of extensions: 248680
Number of successful extensions: 728
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -