Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C08
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 62 1e-10
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 28 2.8
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC024791-33|AAF60669.1| 175|Caenorhabditis elegans Human/fissio... 27 6.4
Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z69789-5|CAL36496.1| 476|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z69789-1|CAA93650.2| 540|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 26 8.5
AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical... 26 8.5
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 62.1 bits (144), Expect = 1e-10
Identities = 33/72 (45%), Positives = 42/72 (58%)
Frame = +2
Query: 143 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLP 322
++E F+++ L EKIVLPSA+D+ EK L D I F + +LK TET EKN LP
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLP 112
Query: 323 DKDVVAAEKAHQ 358
VA EK Q
Sbjct: 113 SPTDVAREKTLQ 124
Score = 60.9 bits (141), Expect = 3e-10
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +2
Query: 101 SLKDLPNVANDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDA 277
++ +LP + +L + EG L+ V+T EK VLP+ EDVA EK IE FD+
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 278 TSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHF 385
T L T +EK LP D + EK H L + + +F
Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95
Score = 44.0 bits (99), Expect = 4e-05
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 272 DATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKT 394
+ LK ET EKN LP K+ VA EK H + +EHFD T
Sbjct: 20 EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDST 60
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 131 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET 301
+L ++ F + L+ +T EK VLPS DVA EKT + FD ++L H ET
Sbjct: 87 ELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQM----AASFDKSALHHVET 139
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +3
Query: 156 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 332
ST + ST R SS YSTV ++ +Q P+R +C T +
Sbjct: 56 STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115
Query: 333 --LSQRKRHIR 359
S K H++
Sbjct: 116 NGTSDAKSHLK 126
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +3
Query: 156 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 332
ST + ST R SS YSTV ++ +Q P+R +C T +
Sbjct: 56 STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115
Query: 333 --LSQRKRHIR 359
S K H++
Sbjct: 116 NGTSDAKSHLK 126
>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
protein F18E2.3 protein.
Length = 1096
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 275 ATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHF 385
A ++ T T+E + D+++VAA K+ + + E V+ +
Sbjct: 93 APMVRRTTTEESAEVDDRELVAAVKSGKKITEAVDRW 129
>AC024791-33|AAF60669.1| 175|Caenorhabditis elegans Human/fission
yeast mis (minichromosomestability) homolog protein 12
protein.
Length = 175
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +2
Query: 227 TEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDK 391
++KT + F +++F T++ P K ++A+ K H++L + + FD+
Sbjct: 65 SDKTNEKAFKMMKRFCVTNIFRIPASVTLPECKKMLIASAKEHKSLKQVEKEFDE 119
>Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical
protein C17E4.6 protein.
Length = 391
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 230 EKTQKSLFDGIEKFDATSLKHTETQEKN 313
EKT+K + ++K++A L+ +EKN
Sbjct: 224 EKTEKMNIESLKKYEAFELERKRKREKN 251
>Z69789-5|CAL36496.1| 476|Caenorhabditis elegans Hypothetical
protein F17H10.3b protein.
Length = 476
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 TRLRSARIA-ALSLISHQFLYLIKQWPAQWVTL 98
TR+R RI + IS QF YL+ + +W+TL
Sbjct: 339 TRIRVWRITQVMDKISFQFEYLMAKDTFEWITL 371
>Z69789-1|CAA93650.2| 540|Caenorhabditis elegans Hypothetical
protein F17H10.3a protein.
Length = 540
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 TRLRSARIA-ALSLISHQFLYLIKQWPAQWVTL 98
TR+R RI + IS QF YL+ + +W+TL
Sbjct: 403 TRIRVWRITQVMDKISFQFEYLMAKDTFEWITL 435
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 324 SGRGFFSWVSVCFKLVASNFSIPSNR--DFWVFSV 226
S RG VS CF LV NF++ N DF V S+
Sbjct: 5 SPRGCQHCVSYCFVLVIKNFTLVQNAAVDFRVCSI 39
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 324 SGRGFFSWVSVCFKLVASNFSIPSNR--DFWVFSV 226
S RG VS CF LV NF++ N DF V S+
Sbjct: 5 SPRGCQHCVSYCFVLVIKNFTLVQNAAVDFRVCSI 39
>AL034393-13|CAA22317.1| 340|Caenorhabditis elegans Hypothetical
protein Y18D10A.17 protein.
Length = 340
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 152 GFNTSCLRDVDTNEKIVLPSAEDV--ATEKTQKSLFDGIEKFDATSLKHTETQEK 310
G N + V+ EK+ S D A EK Q+ L D +EK + E +EK
Sbjct: 169 GHNNYGVPRVNHREKLKFESDFDFEKANEKFQEVLVDNLEKLNIEDKAEPEVEEK 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,472,410
Number of Sequences: 27780
Number of extensions: 198458
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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