Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C04
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 206 1e-54
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 57 1e-09
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 56 3e-09
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 30 0.25
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 1.8
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 4.1
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 5.5
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 5.5
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 5.5
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 7.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.2
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 9.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 9.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.5
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 206 bits (504), Expect = 1e-54
Identities = 99/178 (55%), Positives = 129/178 (72%), Gaps = 1/178 (0%)
Frame = +3
Query: 9 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 188
QP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPE
Sbjct: 41 QPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPE 100
Query: 189 TEAVRKERLKKAAEANV-AKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPI 365
T A +K+RL AEA K + K+P ++ G N V L+E KKA+LV+IA DVDPI
Sbjct: 101 TAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPI 160
Query: 366 ELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAI 539
ELV+FLPALC+KMGVPY IVK K+RLG ++H+KT +A+T V D+ + +V A+
Sbjct: 161 ELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAV 218
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 57.2 bits (132), Expect = 1e-09
Identities = 36/121 (29%), Positives = 54/121 (44%)
Frame = +3
Query: 171 EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAH 350
+ Y P + K K + K + K+ + LR G V K V K + LV++A
Sbjct: 19 DSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILAG 77
Query: 351 DVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVV 530
D+ P++++ +P LC VPY K LG + K TS + V G + SKV
Sbjct: 78 DISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKDMSKVE 136
Query: 531 E 533
E
Sbjct: 137 E 137
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 56.4 bits (130), Expect = 3e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 279 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALV 455
LR G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG A
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 456 HRKTCTSVALTNVESGD 506
+ S ++T E+ D
Sbjct: 92 VSRPVISASITTNEASD 108
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 FKILEKYRPETEAVRKERLKKAAEA-NVAKKDEPPPKRPNTLRAGTNTVTK 308
F+ E+YR +++++K K EA N + PP + +R G N ++
Sbjct: 430 FQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSR 480
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -1
Query: 535 ASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGS 356
++T++ + ST ++L+ V ++ T +Q + KS+ +G
Sbjct: 587 SNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQ 646
Query: 355 TS*AMTTSCAFFFSTSLVT 299
T+ TTS + F+T+L T
Sbjct: 647 TTTEYTTSGSVGFTTTLAT 665
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 72 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 173
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 85 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 183
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 442 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 356
+ +LPF P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 5.5
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 111 INQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPP--PKRPNTLR 284
I F + AKG+ +I+ TEA R RL +A +AK ++ P P + L+
Sbjct: 736 IKDFVILEENGIAKGIRRIVAV--TSTEANRVSRLANEFDARIAKLEKMPFSPAKEAELK 793
Query: 285 AGTNTVTKLV 314
+ ++KLV
Sbjct: 794 KISVDLSKLV 803
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 5.5
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 91 VSKCRRQSTSSPRH*IKPQPK-VCSRSW-RNTGQKLRQSGKSV*RKPPKPMLLRKMSRHR 264
+++ RQ T P+ + Q K + +R R+ Q+ R++ S R K L R+M R R
Sbjct: 103 IAQLIRQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRM-RRR 161
Query: 265 KGQTPYALEPT 297
+G+ AL PT
Sbjct: 162 EGRVQKALRPT 172
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +3
Query: 144 TAKGLFKILEKYR 182
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 171 EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAH 350
E R E+E L + N + E +P+T+ GT+ + + E K+ + ++
Sbjct: 668 ENKRSESELTMSNVLSNEGDRN-EEGSEINSSQPSTINHGTDHINIVSENKETTVSLLHG 726
Query: 351 DVD 359
DV+
Sbjct: 727 DVE 729
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 424 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 284
T+ I+ +AG + T+S+GS+S A T + A ST V +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -3
Query: 527 YLREGGTVSRLHICKSD---ARASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKF 366
++++ G S L C++ +S T + + S F HDT S+ QE+H +
Sbjct: 595 FVKKIGCQSELFNCENSDWTKVSSSTAFHLSNSLFETHDTTGTSNFAVSIQQEKHYY 651
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 90 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 215
RL + P+ F KTTAK L + + RP+ E +R L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 379 SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 468
SC++ F+ WES H WVRL RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 115 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 213
+ + RH + P+ ++C S RN G +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,687
Number of Sequences: 5004
Number of extensions: 45675
Number of successful extensions: 155
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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