Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C04
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 227 4e-60
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 194 3e-50
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 109 1e-24
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 73 1e-13
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 50 8e-07
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 35 0.033
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 31 0.41
AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical... 30 1.2
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 28 3.8
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 28 3.8
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 28 3.8
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 28 3.8
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 28 3.8
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 28 5.0
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 27 6.6
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 27 6.6
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 27 6.6
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 27 6.6
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 27 6.6
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 27 6.6
AL032626-25|CAH10813.1| 406|Caenorhabditis elegans Hypothetical... 27 8.7
AL032626-24|CAA21530.1| 499|Caenorhabditis elegans Hypothetical... 27 8.7
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 227 bits (555), Expect = 4e-60
Identities = 103/177 (58%), Positives = 136/177 (76%)
Frame = +3
Query: 9 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 188
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 47 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPE 106
Query: 189 TEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 368
+ +K RL+ AEA A K E KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 107 STEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLE 166
Query: 369 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAI 539
+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D++A +K+VE +
Sbjct: 167 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETV 223
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 194 bits (473), Expect = 3e-50
Identities = 95/177 (53%), Positives = 126/177 (71%)
Frame = +3
Query: 9 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 188
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 47 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPE 106
Query: 189 TEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIE 368
+ V K RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 107 STEVTK--------------------RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLE 146
Query: 369 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVESGDRAAFSKVVEAI 539
+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D++A +K+VE +
Sbjct: 147 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETV 203
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 109 bits (262), Expect = 1e-24
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3
Query: 9 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 188
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 150 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPE 209
Query: 189 TEAVRKERLKKAAEANVAKKDE 254
+ +K RL+ AEA A K E
Sbjct: 210 SSEAKKNRLRARAEARAAGKKE 231
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3
Query: 9 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 137
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 150 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +3
Query: 279 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 452
L+ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 453 VHRKTCTSVALTNVESGDRAAFSKVVEAIK 542
V R + N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 50.4 bits (115), Expect = 8e-07
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 141 TTAKGLFKIL-EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVE 317
TT K ++ L E P + + +L K + KK K TLR G V K +
Sbjct: 26 TTEKDEYQALCELVNPIAQPLANRKLAKKVY-KLIKKASAGDK---TLREGIKDVQKELR 81
Query: 318 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRKTCTSVALTNV 494
+ + + ++A +V PI++ +P +C + +PY + + +LG A+ HR+ S+ +
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR--PSILIFVK 139
Query: 495 ESGD-RAAFSKVVEAIK 542
SGD + + +V EA++
Sbjct: 140 PSGDFKELYDEVAEALR 156
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 35.1 bits (77), Expect = 0.033
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKE------RLKKAAEANVAKKDEPPPKRP----NTLRA 287
KT AK L + LEK P+ +A+R+E RL K E + K DE P+ + L A
Sbjct: 7816 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNK-LEKELTKVDEFKPEDALPIVDQLAA 7874
Query: 288 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 7875 NTNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 7907
Score = 34.3 bits (75), Expect = 0.058
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPPPKRP----NTLRAG 290
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 3250 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 3309
Query: 291 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 3310 TNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 3341
Score = 34.3 bits (75), Expect = 0.058
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPPPKRP----NTLRAG 290
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 4153 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 4212
Query: 291 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 4213 TNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 4244
Score = 34.3 bits (75), Expect = 0.058
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPPPKRP----NTLRAG 290
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 5107 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 5166
Query: 291 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 5167 TNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 5198
Score = 34.3 bits (75), Expect = 0.058
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPPPKRP----NTLRAG 290
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 6010 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 6069
Query: 291 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 6070 TNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 6101
Score = 34.3 bits (75), Expect = 0.058
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +3
Query: 138 KTTAKGLFKILEKYRPETEAVRKERLK-----KAAEANVAKKDEPPPKRP----NTLRAG 290
KT AK L + LEK P+ +A+R+E+ + E + K DE P+ + L A
Sbjct: 6913 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEKELTKVDEFKPEDALPIVDQLAAN 6972
Query: 291 TNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 386
TNT+ + + V + + +LV+ LP
Sbjct: 6973 TNTLKTATDSNNEKAVAPSSLISHDDLVVGLP 7004
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 541 LIASTTFEKAARSPDSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 401
L+ T E A +S D F V V TS+PN+D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>AC024776-11|AAK68461.1| 349|Caenorhabditis elegans Hypothetical
protein Y41D4B.11 protein.
Length = 349
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 KILEKYRPETEAVR-KERLKKAAEANVAKKDEPPPKR--PNTLRAGTNTVTKLVEKKKAQ 332
K ++ + + A R K++ K + +A V+ KDE P + N + +G T ++ +KKK +
Sbjct: 16 KSVDPFNNKANAARFKDKNKNSNQAPVSLKDEQPLTKAAKNLMGSGITTKEEVKKKKKQK 75
Query: 333 LVVIA 347
V+A
Sbjct: 76 NAVLA 80
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 165 ILEKYRPETEA-----VRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVT 305
+L++ R E EA ++ E+ KK AE V+KK++ K P +L TVT
Sbjct: 184 VLDEDRKEVEALVEAKIQDEKAKKKAE-KVSKKEKEVEKPPVSLEEAVKTVT 234
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 111 INQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL-KKAAEANVAKKDEPPPKR 269
I +F +T+ + K K + + + +A RK R KKAA A + PPP +
Sbjct: 1080 IIEFAKTISEKDKK--IKAAAESKTKAKATRKPRTTKKAAPATIGMPQPPPPSQ 1131
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 5 EAANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 169
+ A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 66 QEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 5 EAANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 169
+ A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 103 QEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 5 EAANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 169
+ A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 103 QEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 5 EAANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 169
+ A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+
Sbjct: 103 QEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 147 AKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKK 326
+KG IL P EA + K E ++KKDE K+ LRA + K++
Sbjct: 103 SKGPSPILSTV-PRIEAEKIRLWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQR 161
Query: 327 AQLVVIAHD 353
+ + ++HD
Sbjct: 162 EKTLQLSHD 170
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2
Query: 462 YGVQAHPIVIYPSRYSTGLPS 400
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +3
Query: 102 PPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTL 281
PP N + + KT A +LE P A R+ R VA+ DE T
Sbjct: 1443 PPSRNTRSASAQKTVAANK-SVLESEIPSRSASRRTRSTSLRNDTVAEPDETSVAM--TT 1499
Query: 282 RAGTNTVTKLVEKKKAQ 332
R T +++V K+ ++
Sbjct: 1500 RRRTRATSEVVSKQSSE 1516
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 171 EKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKK 326
+KYR ET+ E L K ++A + DE ++ A +EK K
Sbjct: 55 DKYREETQKKLNETLSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWK 106
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 180 RPETEAVRKERLKKAAEANVAKKDEPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 359
R E E K+R++ +A KKDE ++ TL ++ E K +L + + +
Sbjct: 878 RAELEKEFKQRIEVITKAVECKKDEAFARQEKTLEIENRVLSSENESKSKKLEAMNREKE 937
Query: 360 PIELVL 377
+E ++
Sbjct: 938 QLESLI 943
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 7 GSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCR 105
G+QPE VS R+ S KR S+VS CR
Sbjct: 6 GAQPENAAVSIPSRSPSGKSEKRKSPSIVSGCR 38
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 99 VPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNT 278
VP +F++ + ++G +LE+ R KE +KKAAEA + K E +R
Sbjct: 508 VPISPKKFSEMQKEQKSQGAMSLLERIRA------KEAIKKAAEACIDKDLERRKQRLTL 561
Query: 279 LR 284
LR
Sbjct: 562 LR 563
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 99 VPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKKAAEANVAKKDEPPPKRPNT 278
VP +F++ + ++G +LE+ R KE +KKAAEA + K E +R
Sbjct: 508 VPISPKKFSEMQKEQKSQGAMSLLERIRA------KEAIKKAAEACIDKDLERRKQRLTL 561
Query: 279 LR 284
LR
Sbjct: 562 LR 563
>AL032626-25|CAH10813.1| 406|Caenorhabditis elegans Hypothetical
protein Y37D8A.11b protein.
Length = 406
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 66 RQKAVLQRRLKVPPPI---NQFTQTLDKTTAKGLFKILEKYRPET-EAVRKERLKKAAEA 233
+ K Q LKV PP+ N +T++ T A + ++ E ++ +K R++ +A
Sbjct: 141 KAKESSQSALKVEPPLTTHNSSRKTVEATGAMKRLTVAKETEDEALKSQKKARIEPVEDA 200
Query: 234 NVAKKDEPPPKRPNTLRAGTNTVT 305
+ AK P + G ++ T
Sbjct: 201 SKAKGSAAPKSASSRAEDGESSST 224
>AL032626-24|CAA21530.1| 499|Caenorhabditis elegans Hypothetical
protein Y37D8A.11a protein.
Length = 499
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 66 RQKAVLQRRLKVPPPI---NQFTQTLDKTTAKGLFKILEKYRPET-EAVRKERLKKAAEA 233
+ K Q LKV PP+ N +T++ T A + ++ E ++ +K R++ +A
Sbjct: 234 KAKESSQSALKVEPPLTTHNSSRKTVEATGAMKRLTVAKETEDEALKSQKKARIEPVEDA 293
Query: 234 NVAKKDEPPPKRPNTLRAGTNTVT 305
+ AK P + G ++ T
Sbjct: 294 SKAKGSAAPKSASSRAEDGESSST 317
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 48 KYIRIQRQKAVLQR---RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKE 209
+Y+R QR K + + R+K I Q TA +IL+K + E A+RKE
Sbjct: 615 QYLREQRDKLLQMKNAERIKQMTDIQQNASLERPKTAARAREILDKDKKEAVAIRKE 671
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,464
Number of Sequences: 27780
Number of extensions: 269505
Number of successful extensions: 899
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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