Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C03
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   0.53 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   2.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   3.8  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   6.6  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   6.6  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   6.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    24   8.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    24   8.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    24   8.7  
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.7  

>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 173 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 310
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 246 SESTPLTRSRTLCLPSCSIP---SSRTTITVLRRPTST 350
           + S+PL  + T C  S SIP   +S T +T    PTST
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310



 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 246 SESTPLTRSRTLCLPSCSIP---SSRTTITVLRRPTST 350
           + S+PL  + T C  S SIP   +S T +T    PTST
Sbjct: 327 TSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +3

Query: 237 TLVSESTPLTRSRTLCLPSCSIP------SSRTTITVLRRPTST 350
           T  S S+PL  + T C  S SIP      S  T IT    PTST
Sbjct: 100 TTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTST 143



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 246 SESTPLTRSRTLCLPSCSIP---SSRTTITVLRRPTST 350
           + S+PL  + T C  S SIP   +S T +T    PTS+
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSS 418



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 246 SESTPLTRSRTLCLPSCSIP-----SSRTTITVLRRPTST 350
           + S+PL  + T C  S SIP     S  T IT    PTST
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 59  VDAVTIEKLEAGFSKLQCSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVE 229
           V  V  E + +   KL  SES  L KK+   ++   LK++  +   +LLD I+   E
Sbjct: 555 VSKVANESISSNHEKLMESESDRLSKKWENPQLLAQLKSRFIT--GSLLDSIEGQEE 609


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 302 PIIEDYHNGFKKTDKHPAKNWGDVETLGNL 391
           P+++D +NGF    KH + +   V TL NL
Sbjct: 423 PLVDDIYNGFDVDKKHQSSS---VPTLPNL 449


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 263 DAESYSV--FAELFDPIIEDYHNGFKKTDKHPAKNWG 367
           DA S S+  F EL  P   D  N  K   K+P+K WG
Sbjct: 22  DARSKSIAQFKELGPP---DQVNTIKVNAKNPSKEWG 55


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 249 PTPESKFSTPDWMQSSRVEPNEVFLFLRASKTSLV 145
           PTP +  ++ D   S+   P    L  + SKTSLV
Sbjct: 32  PTPTAYLNSNDGHSSAASSPGSYSLKKKRSKTSLV 66


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 77  EKLEA--GFSKLQCSESKSLLKKYLTKEVFEALKN 175
           EKLE   G  KL+ ++  +    YLTK+VFEAL++
Sbjct: 877 EKLENIDGMEKLKVADYAN----YLTKKVFEALRS 907


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 246 SESTPLTRSRTLCLPS--CSIPSSRTTITVLRRPTSTP 353
           S S+  +RSR   L S    +PS R ++ +LRR  + P
Sbjct: 259 SYSSRASRSRQSSLSSRLSELPSKRASLEILRRENTFP 296


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 297 SIPSSRTTITVLRRPTSTPPR 359
           S P+  T  + LR PTS PPR
Sbjct: 126 SAPAPPTPQSELRPPTSAPPR 146


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 280 RVRLRVRGVDSDTRVQVLYT 221
           +VRLRVRG DSD +   + T
Sbjct: 529 QVRLRVRGDDSDVQTGYVLT 548


>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 200 LLDCIQSGVENLDSG-VGIYAPDAESYSVFAELFDPIIEDY 319
           L   + + ++N D   VG ++  +E+     + FDP+ ED+
Sbjct: 15  LTQYVGAEIDNYDENLVGTWSSKSETVLTGPDFFDPLDEDF 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,441
Number of Sequences: 5004
Number of extensions: 33661
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)