Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_C03
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.099
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 1.6
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 29 2.1
06_03_0023 + 15558890-15559117,15559229-15560134 28 2.8
04_04_0437 + 25193263-25194627 28 2.8
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 2.8
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 2.8
10_08_0268 - 16347683-16349089 28 3.7
09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513... 27 4.9
06_03_1296 - 29104857-29105870 27 4.9
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 27 4.9
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 27 4.9
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268 27 6.5
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62... 27 6.5
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 27 8.6
03_05_0447 - 24421442-24422767 27 8.6
02_02_0115 + 6946945-6947087,6947511-6947748 27 8.6
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.099
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 194 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 334
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 402 PAGSRLPRVSTSPQFLAGCLSVFLKP 325
P G R ST LAGC+ VFL P
Sbjct: 348 PRGDSYTRKSTFDSMLAGCIPVFLHP 373
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.7 bits (61), Expect = 2.1
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 11 AVDSDGCSSARKAAAMVDAVTIEKLEAGFSKLQCSESKSLLKKYLTKEVFEALKN----K 178
A++ G + +AAA V A L KLQ S L +K L +E+ + L+
Sbjct: 349 ALNDGGAEAPARAAAGVPAEADADLSPTNKKLQSLYSSLLKEKELIQELLQGLRGVEECA 408
Query: 179 KTSFGSTLLDCIQSGVENLDSGVGIY-APDAESYSVFAELFDPI 307
+ S + I+S V + S + Y DAE+ + A+L P+
Sbjct: 409 RAQAESPNRETIRSIVSTVLSHLASYDRVDAEATELRAQLQHPV 452
>06_03_0023 + 15558890-15559117,15559229-15560134
Length = 377
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 59 VDAVTIEKLEAGFSKLQCSESKSLLKKYLTKEV 157
VDAV +E L+ GF C ++ ++ +T E+
Sbjct: 23 VDAVIVEGLQVGFYNQTCPSAEEAVRDVVTSEI 55
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 173 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 298
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 249 PTPESKFSTPDWMQSSRVEPNE 184
P PE+K TPDW+QS ++ E
Sbjct: 117 PPPEAKKVTPDWLQSVQLWSQE 138
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 228 RTWTLVSESTPLTRSRTLCLPSCSIPSSRTTITVLRRPTSTPPRTGA 368
R T ++ +TP S+ + C +PSS+ T+ + RR T T +T A
Sbjct: 523 RVETDMAPATPGGSSQLVENRRCQLPSSQITVKMTRRNTPTGQKTVA 569
>10_08_0268 - 16347683-16349089
Length = 468
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 402 PAGSRLPRVSTSPQFLAGCLSVFLKP 325
P G + R ST LAGC+ VF P
Sbjct: 344 PRGDTMTRRSTFDAILAGCIPVFFHP 369
>09_04_0612 -
18950025-18950192,18950501-18950637,18951202-18951350,
18951738-18951968,18952654-18952724
Length = 251
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 260 PDAESYSVFAELFDPIIEDYHNGFKKTDKHPA 355
P + SY V +FD + D+ + F + D H A
Sbjct: 202 PYSRSYKVLWRVFDKLFTDFRDCFSRGDYHDA 233
>06_03_1296 - 29104857-29105870
Length = 337
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = -3
Query: 228 STPDWMQSSR---VEPNE-VFLFLRASKTSLVRYFFNSDFDSEHWSLL 97
S PDW + V NE V L KT FF D + WSLL
Sbjct: 193 SCPDWSKQDSHFLVASNEQVVAILHPCKTGSAFKFFKLDLQAMEWSLL 240
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 26 GCSSARKAAAMVDAVTIEKLEAGFSKLQCSESKSLLKKY 142
G +A +AAA D V + + EAGF L SES+ K++
Sbjct: 47 GEKAAAEAAAAADGVVVGEAEAGFD-LSASESEFDQKRH 84
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 216 WMQSSRVEPNEVFLFLRASKTSLVRYFFNSDFDSEHWSLLKPA 88
W S + L RA+ LVR +FN D EHW L+ A
Sbjct: 40 WALGSERRVLALALAFRAANALLVRTYFNPD---EHWQCLEVA 79
>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
Length = 583
Score = 27.1 bits (57), Expect = 6.5
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Frame = +3
Query: 6 CSQSTLTVVQVPEKPQQWWTP*PSRNWRLVSASSNAR-----NQS-RC*RST*PRRFSKP 167
C + + ++Q P +P W++P + +V +++ A +QS C + P R ++
Sbjct: 66 CLRRSRFLLQPPSEP--WYSPFTAAGAEVVPSATAAALHYCPHQSPECPNGSSPSRTARS 123
Query: 168 L---RIKRPHLALPCWIASNQV*RTWTLVSESTPLTRSRTLCLPSCSIPSSRTTITVLRR 338
+ P + L +++ + + +S +T T+C CSIP + + +T++
Sbjct: 124 IYDDEGSTPTIILELGGGEDKIHDPYIIAKDSLEVTP--TMCSMKCSIPDTESNLTMVAE 181
Query: 339 PTSTPPRTGAM 371
T T +M
Sbjct: 182 VTYASTATVSM 192
>02_01_0087 +
623174-623421,623576-623693,624266-624588,625267-625551,
625643-625823,625964-626119
Length = 436
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -3
Query: 273 DSASGA*IPTPESKFSTPDWMQSSRVEPNEVFLFLRASKTSLVRYFFNSDFDSEHWSLLK 94
DS++ T + + P + S R + L RA+ LVR +FN D EHW L+
Sbjct: 20 DSSTAQASSTEKERPDPPSVLGSER-RVLALALAFRAANALLVRTYFNPD---EHWQCLE 75
Query: 93 PA 88
A
Sbjct: 76 VA 77
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -1
Query: 272 TPRQGRRFRHQSPSSLHLIG----CNPAG*SQMRSFYS*GLR-KPPWLGTS 135
T R+ + HQS +L L+G + +G + R FY +R +P +LG +
Sbjct: 840 TAREAMKVMHQSAKALKLVGDVHAISSSGREKARKFYESAIRLEPGFLGAA 890
>03_05_0447 - 24421442-24422767
Length = 441
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 23 DGCSSARKAAAMVDAVTIEKLEAGFSK 103
DGC S+ A++ A + +LEAG K
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRK 89
>02_02_0115 + 6946945-6947087,6947511-6947748
Length = 126
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 54 QW-WTP*PSRNWRLVSASSNARNQS 125
+W W P P+R W +V++ S+ R S
Sbjct: 37 RWQWRPPPARRWDIVASVSSTRQSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,702
Number of Sequences: 37544
Number of extensions: 242989
Number of successful extensions: 896
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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