Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C01
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   1.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   2.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   4.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.3  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   6.3  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   8.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 86  YVSHNAAGPYSSMTRILKRYKLNYHLTSKHTESIPGTIVDFSGYPGSVTS 235
           Y+ +  A   S +   +K+YK+N        E +  T+ D +  P S+T+
Sbjct: 349 YLEYLEASYQSDLVAAIKKYKINLRSLIIIDEGVSNTVKDLAFLPQSLTT 398


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 80  KLYVSHNAAGPYSSMTRILKRYKLNYH 160
           K+ VSH      + + +ILK ++L YH
Sbjct: 567 KIAVSHKLTNDETYLLKILKNFQLRYH 593


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 371  QIFVAQLVPVYLYRHLSTFCYYNSSK 294
            Q+F+  L+ +    H+ T CYYN ++
Sbjct: 1369 QLFMVVLINLGAIYHVVTVCYYNGNQ 1394


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 293 TLKNYNNKMWKDVDINKQVPAGPRIFAANHLATNVSS 403
           TLK   N+ +  V IN+ V +  + F+A   +  VSS
Sbjct: 678 TLKKLENQYYSHVYINRAVSSYDKAFSAEQPSFGVSS 714


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 20  ASSAFLRIVNEMYDDTTPTKKLYVSHNAAGPYSSMTRILKRYKLNYHLTSKHTESIP 190
           ASS      N +   T+     Y+ + ++  Y+S T  L    L+   +S  T  IP
Sbjct: 526 ASSTGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIP 582


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 179 PCALMLNGSSTCIALICESLTNMVQLHCER 90
           PC L   G S  I   C SL  +V L  +R
Sbjct: 157 PCYLQFQGHSIIIIGFCSSLETLVVLDPDR 186


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 14  PDASSAFLRIVNEM-YDDTTPTKKLYVSHNAAGPYSSMTRILKRYKLNYHLTSKHTES 184
           P   + F+   +EM     TPT  ++  +++ G   S+TR +K    N       TES
Sbjct: 64  PAEDAVFVERASEMALHQPTPTSAVHSRNSSLGYAPSITRSIKSISNNTEHLGADTES 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,456
Number of Sequences: 5004
Number of extensions: 47624
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)