Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C01
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869     31   0.39 
06_03_0882 + 25638649-25639575,25639717-25639770,25639792-25639806     29   1.6  
03_02_0355 + 7764043-7764189,7764867-7764942,7766151-7766362           29   1.6  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    27   6.3  
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723           27   6.3  

>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
          Length = 400

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 176 TESIPGTIVDFSGYPGSVTSQDEFYIVKGENHEMVITGTTLKNYNNKMW 322
           T  I GT+V  SGY GS +S  E +IV      + ++G TL      +W
Sbjct: 88  TVQIDGTLVAPSGYTGSASSGGE-WIVFDHVDGLTVSGGTLDGRGESLW 135


>06_03_0882 + 25638649-25639575,25639717-25639770,25639792-25639806
          Length = 331

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 234 AKMSFILLKGRIMKWLSLVRL*RIIITKCGKMSI*INRYQLGHEYLPLI 380
           AKM+ +L +G +   ++LV L  +++TKC + +    R   G   LP+I
Sbjct: 5   AKMADVLSQGYVYLAMALVALLGVLLTKCSRTATAQRRLPPGPWQLPVI 53


>03_02_0355 + 7764043-7764189,7764867-7764942,7766151-7766362
          Length = 144

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 373 GKYSWPSWYLFIYIDIFP-HFVII 305
           GK + PSWY   Y DI P HF II
Sbjct: 45  GKAAQPSWYYLYYADIEPVHFDII 68


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 261 PLTI*NSSWLVTEPGYPEKSTIVPGIDSVCFDV 163
           PL+I NS  L  +  +  K   +P +D VC+++
Sbjct: 417 PLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEI 449


>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
          Length = 757

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 84  NFLVGVVSSYISFTILKNALDASGN 10
           N+LVGV+   IS  I    LD SGN
Sbjct: 123 NYLVGVIPINISMLIALTVLDLSGN 147



 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 84  NFLVGVVSSYISFTILKNALDASGN 10
           N+LVGV+   IS  I    LD SGN
Sbjct: 171 NYLVGVIPINISMLIALTVLDLSGN 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,814
Number of Sequences: 37544
Number of extensions: 283749
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)