Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_C01
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030618-1|AAH30618.1|  589|Homo sapiens hypothetical protein LO...    81   2e-15
BC063561-1|AAH63561.1|  552|Homo sapiens hypothetical protein FL...    64   3e-10
AK026315-1|BAB15442.1|  506|Homo sapiens protein ( Homo sapiens ...    64   3e-10
BC000909-1|AAH00909.2|  223|Homo sapiens FLJ22662 protein protein.     29   9.0  

>BC030618-1|AAH30618.1|  589|Homo sapiens hypothetical protein
           LOC196463 protein.
          Length = 589

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
 Frame = +2

Query: 83  LYVSHNAAGPYSSMTRILKRYKLNYHLTS-KHTESIPGTIVDFSGYPGSVTSQDEFYIVK 259
           L V+HN    Y  M R++K+Y L +          +PG  + FS YPG++ S D+FYI+ 
Sbjct: 257 LLVAHNTWNNYQHMLRVIKKYWLQFREGPWGDYPLVPGNKLVFSSYPGTIFSCDDFYIL- 315

Query: 260 GENHEMVITGTTLKNYNNKMWKDVDINKQVPAGPRIFAANHLATNVSSWGHILANSNSGT 439
                +V   TT+ N N  +WK V     V    R   AN LA++ ++W  I    NSGT
Sbjct: 316 --GSGLVTLETTIGNKNPALWKYVRPRGCVLEWVRNIVANRLASDGATWADIFKRFNSGT 373

Query: 440 ASKQWLVIDF 469
            + QW+++D+
Sbjct: 374 YNNQWMIVDY 383


>BC063561-1|AAH63561.1|  552|Homo sapiens hypothetical protein
           FLJ22662 protein.
          Length = 552

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 40/137 (29%), Positives = 73/137 (53%)
 Frame = +2

Query: 77  KKLYVSHNAAGPYSSMTRILKRYKLNYHLTSKHTESIPGTIVDFSGYPGSVTSQDEFYIV 256
           + +  +H++   Y++M RI K +  N  +  K T S   + + FS YPG + S D+FYI+
Sbjct: 238 ENILFAHSSWYTYAAMLRIYKHWDFN--IIDKDTSS---SRLSFSSYPGFLESLDDFYIL 292

Query: 257 KGENHEMVITGTTLKNYNNKMWKDVDINKQVPAGPRIFAANHLATNVSSWGHILANSNSG 436
                 +++  TT   +N  + K V I + + +  R+  AN +A +   W  I +  NSG
Sbjct: 293 SSG---LILLQTTNSVFNKTLLKQV-IPETLLSWQRVRVANMMADSGKRWADIFSKYNSG 348

Query: 437 TASKQWLVIDFTKLTVD 487
           T + Q++V+D  K+ ++
Sbjct: 349 TYNNQYMVLDLKKVKLN 365


>AK026315-1|BAB15442.1|  506|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22662 fis, clone HSI08080. ).
          Length = 506

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 40/132 (30%), Positives = 71/132 (53%)
 Frame = +2

Query: 92  SHNAAGPYSSMTRILKRYKLNYHLTSKHTESIPGTIVDFSGYPGSVTSQDEFYIVKGENH 271
           +H++   Y++M RI K +  N  +  K T S   + + FS YPG + S D+FYI+     
Sbjct: 197 AHSSWYTYAAMLRIYKHWDFN--IIDKDTSS---SRLSFSSYPGFLESLDDFYILSSG-- 249

Query: 272 EMVITGTTLKNYNNKMWKDVDINKQVPAGPRIFAANHLATNVSSWGHILANSNSGTASKQ 451
            +++  TT   +N  + K V I + + +  R+  AN +A +   W  I +  NSGT + Q
Sbjct: 250 -LILLQTTNSVFNKTLLKQV-IPETLLSWQRVRVANMMADSGKRWADIFSKYNSGTYNNQ 307

Query: 452 WLVIDFTKLTVD 487
           ++V+D  K+ ++
Sbjct: 308 YMVLDLKKVKLN 319


>BC000909-1|AAH00909.2|  223|Homo sapiens FLJ22662 protein protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 383 LATNVSSWGHILANSNSGTASKQWLVIDFTKLTVD 487
           +A +   W  I +  NSGT + Q++V+D  K+ ++
Sbjct: 2   MADSGKRWADIFSKYNSGTYNNQYMVLDLKKVKLN 36


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,302,166
Number of Sequences: 237096
Number of extensions: 1666747
Number of successful extensions: 2725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)