Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_B23
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    44   7e-06
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.49 
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   1.1  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    27   1.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   1.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   2.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   2.6  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    25   3.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   4.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   4.6  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   6.1  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    24   8.0  

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = +2

Query: 143 FTLKKSFKVEVETFCKHYTMKEKVEKIEGFSYLPLEGPVKLKNPDITLSYLE 298
           F    S+K   ETF    TMKE++  I  F Y+ L+GPV + NP    + LE
Sbjct: 129 FKHNSSYKFTFETFGTRRTMKEQLSIISDFEYMQLQGPVSMHNPQHVFTVLE 180


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
 Frame = +2

Query: 74  LSDNSSNNISDCHICPKELIESC----FTLKKSFKVEVETFCK--HYTMKEKVEKIEGFS 235
           L D+++N ++D     ++ I+ C    + L++ F    + +    H   K+K  KIE  +
Sbjct: 61  LVDDNANKLTDA----RDTIDLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELN 116

Query: 236 YLP--LEGPVKLKNPDITLSYLEYYGADPNNVPEKPYDVFIGRL 361
           YLP  L     + N +  +  L+   A P  + E+ YDV++G L
Sbjct: 117 YLPPVLFIHGLMMNSESWVCNLKKEDAIPFALVEQGYDVWLGNL 160


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 41  KTALKNTCGRWLSDNSSNNISDCH 112
           +T  KN    W+SD++    S CH
Sbjct: 242 ETLAKNNLWEWISDDNGKKFSHCH 265


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 278 ITLSYLEYYGADPNNVPEKPYDVFIGRLALRRRL 379
           +T  Y E+  A+  N PE PY  +   L LR+ L
Sbjct: 464 VTNDYKEWNAANQVNDPESPYTFWSKALELRKEL 497


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = -2

Query: 348 NTSYGFSGTLLGSAP*YSKYDNVISGFFNFTGPSNGK*LKPSIFSTFSFIV*CL 187
           N +  F   +L S   ++++++V + +F+FT P +   +   + S +  ++ C+
Sbjct: 345 NKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNPPSRSCVAAPLASEYRIVMSCI 398


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 260 KLKNPDITLSYLEYYGADPNNV 325
           K K P + L+YL Y+ AD + +
Sbjct: 608 KFKGPSVVLAYLPYHSADDDAI 629


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 2    HEAKTEAQLHTNLKTALKNTCGRWL 76
            H+ +T + + TN+ T L + C  W+
Sbjct: 1186 HDYQTASNIQTNIVTTLGDQCEHWI 1210


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 266 KNPDITLSYLEYYGADPNNVPEKPYDVFIGRLALR 370
           +NPD+   Y   +       PE P D+FI  L +R
Sbjct: 123 ENPDLFDIYHAGFRYQVEGWPENPVDIFIQHLKIR 157


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 242  PLEGPVKLKNPDITLSYLEY-YGADPNNVPEKPYDVFIGRLA 364
            PL+  +KL NP +  +YL+Y +  D  N+     + F   L+
Sbjct: 1536 PLDS-LKLLNPHVVYTYLKYLWATDQKNIAVSELEEFTSYLS 1576


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 245 LEGPVKLKNPDITLSYLEYYGADPNNVPEKP 337
           LE PV   NP  +L++L   G  P+++   P
Sbjct: 75  LESPVSYSNPIPSLTWLSLDGDSPDSLVSTP 105


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 155 KSFKVEVETFCKHYTMKEKVEKIEGFSYLPLEGPVKLKN 271
           +SF V   + CK   +++ + ++ G     L+  +KL+N
Sbjct: 506 QSFPVSFHSICKGRLIRDSINRLNGSLLGELDNFIKLQN 544


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 152 KKSFKVEVETFCKHYTMKEKVEKIE 226
           ++ F ++  + CK Y +K   EKIE
Sbjct: 73  QEMFSMDCNSICKSYVLKVAEEKIE 97


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 35  NLKTALKNTCGRWLSDNSSNNISD 106
           N+ T+ +  CG ++SD++  +I+D
Sbjct: 192 NVATSCRTFCGYYISDDAIKHIAD 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,758
Number of Sequences: 5004
Number of extensions: 32806
Number of successful extensions: 92
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)